Tableau information
Concept source: d4k9ya_ amino acid (a.a.) range (PRO447)(ASP479)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO447) (ASN458) E1
(ASP462) (PHE468) H2
(LEU469) (ASP479) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 140.9° H2
H3 151.8° -31.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ppja1 : (MET195) (SER220) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 1 |Cow (Bos taurus) [TaxId: 9913]
d1mo1b_ : (LEU63) (GLU83) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d1cbya_ : (ASN44) (ASP69) [view usage] : d.103.1.1 |CytB endotoxin-like |CytB endotoxin-like |CytB endotoxin-like |Mosquitocidal delta-endotoxin CytB |Bacillus thuringiensis, strain Kyushuensis [TaxId: 1428]
d4jghc_ : (ASN58) (LEU110) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1vs6i2 : (ALA6) (LEU27) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Escherichia coli [TaxId: 562]
d1yf5l2 : (THR65) (LEU81) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |Cytoplasmic domain of general secretion pathway protein L, EpsL |Vibrio cholerae [TaxId: 666]
d2oiwc_ : (PHE2) (LEU38) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |GK1870 orthologue |Bacillus stearothermophilus [TaxId: 1422]
d1rkib_ : (HIS4) (TYR26) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d2odfc_ : (MET223) (ILE255) [view usage] : c.56.5.9 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |FGase-like |Hypothetical protein Atu2144 |Agrobacterium tumefaciens [TaxId: 358]
d2z23a_ : (ARG413) (ASN437) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Yersinia pestis [TaxId: 214092]
d1irue_ : (ILE215) (ILE241) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome alpha subunit (non-catalytic) |Cow (Bos taurus) [TaxId: 9913]
d3gc2a1 : (GLU38) (THR95) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d1vljb_ : (PRO9) (GLY30) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |NADH-dependent butanol dehydrogenase A (TM0820) |Thermotoga maritima [TaxId: 2336]
d1umka2 : (LEU269) (VAL290) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |cytochrome b5 reductase |Human (Homo sapiens) [TaxId: 9606]
d1fuia2 : (LEU6) (LEU45) [view usage] : c.85.1.1 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |L-fucose isomerase, N-terminal and second domains |L-fucose isomerase, N-terminal and second domains |Escherichia coli [TaxId: 562]
d1y5yc_ : (ASN2065) (GLY2102) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d1rlfa_ : (VAL665) (ASN688) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |RalGDS-like factor, Rlf |Mouse (Mus musculus) [TaxId: 10090]
d1twye_ : (GLU29) (HIS53) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d4fjvc_ : (THR40) (LEU65) [view usage] : d.3.1.11 |Cysteine proteinases |Cysteine proteinases |Ubiquitin thiolesterase protein OTUB2 (Otubain-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ba0g2 : (VAL223) (LYS257) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 2, ECX2 |Archaeoglobus fulgidus [TaxId: 2234]
d1woka2 : (LEU860) (GLN875) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wq4b_ : (GLY418) (GLY454) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Camellia sinensis [TaxId: 4442]
d1gqea_ : (CYS128) (GLY160) [view usage] : e.38.1.1 |Release factor |Release factor |Release factor |Polypeptide chain release factor 2 (RF2) |Escherichia coli [TaxId: 562]
d1d7oa_ : (ASP131) (PHE173) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Oil seed rape (Brassica napus) [TaxId: 3708]
d4qp0a_ : (GLU292) (ASP317) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2mksa_ : (GLY10) (GLY34) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wq5b_ : (GLY418) (GLY454) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Camellia sinensis [TaxId: 4442]
d3lf6a_ : (TYR18) (GLY43) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d2df4b2 : (GLU203) (LEU236) [view usage] : d.128.1.5 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |GatB/GatE catalytic domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1j42a_ : (LYS122) (ASN135) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |DJ-1 |Human (Homo sapiens) [TaxId: 9606]
d1xiza_ : (TYR10) (GLY35) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Putative PTS protein STM3784 |Salmonella typhimurium [TaxId: 90371]
d1iula_ : (ASP72) (ARG94) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Hypothetical protein TT1466 |Thermus thermophilus [TaxId: 274]
d2jz3c_ : (ASN58) (LEU110) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Elongin C |Mouse (Mus musculus) [TaxId: 10090]
d2rbeb_ : (ASP114) (ALA154) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Human (Homo sapiens) [TaxId: 9606]
d1kuua_ : (GLU152) (PHE179) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1q2la4 : (MET231) (VAL255) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Protease III |Escherichia coli [TaxId: 562]
d4nd8a_ : (PRO437) (LEU475) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |automated matches |Azotobacter vinelandii [TaxId: 354]
d1hv8a2 : (GLU215) (LYS235) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Putative DEAD box RNA helicase |Methanococcus jannaschii [TaxId: 2190]
d1l6wa_ : (MET1) (PHE20) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Decameric fructose-6-phosphate aldolase/transaldolase |Escherichia coli [TaxId: 562]
d3qusa_ : (ASP296) (ALA321) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |automated matches |Moorella thermoacetica [TaxId: 1525]
d1eg7a_ : (ASP1296) (GLY1322) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d2ix0a1 : (THR148) (ASN169) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d3ioha_ : (LEU173) (ARG199) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |Glycosyltransferase A catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1vlja_ : (PRO9) (GLY30) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |NADH-dependent butanol dehydrogenase A (TM0820) |Thermotoga maritima [TaxId: 2336]
d1iona_ : (ILE4) (GLY31) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Pyrococcus horikoshii [TaxId: 53953]
d1c8ua2 : (PRO176) (LEU212) [view usage] : d.38.1.3 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-CoA thioesterase |Thioesterase II (TesB) |Escherichia coli [TaxId: 562]
d4fjva_ : (THR40) (LEU65) [view usage] : d.3.1.11 |Cysteine proteinases |Cysteine proteinases |Ubiquitin thiolesterase protein OTUB2 (Otubain-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x1ob1 : (VAL90) (GLY116) [view usage] : d.41.2.0 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3sxla1 : (THR125) (GLY149) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Sex-lethal protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1mu4b_ : (THR59) (GLU83) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d4nl5b_ : (PRO2) (ARG26) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4omwa_ : (LEU22) (ARG40) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Goat (Capra hircus) [TaxId: 9925]
d1mo1a_ : (THR59) (GLU83) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d2nuja1 : (THR25) (HIS64) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical protein Jann_1972 |Jannaschia sp. CCS1 [TaxId: 290400]
d2b7na1 : (MET77) (GLY102) [view usage] : d.41.2.0 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
d1yhta1 : (GLY324) (GLY359) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Dispersin B, DspB |Actinobacillus actinomycetemcomitans [TaxId: 714]
d1iuka_ : (ASP72) (ARG94) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Hypothetical protein TT1466 |Thermus thermophilus [TaxId: 274]
d2odfa1 : (MET223) (GLU257) [view usage] : c.56.5.9 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |FGase-like |Hypothetical protein Atu2144 |Agrobacterium tumefaciens [TaxId: 358]
d2ntka_ : (GLU152) (PHE179) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d3b55a_ : (THR108) (LEU127) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d2oiwd_ : (PHE2) (LEU38) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |GK1870 orthologue |Bacillus stearothermophilus [TaxId: 1422]
d2k2qa_ : (GLN7) (GLY28) [view usage] : a.28.1.2 |Acyl carrier protein-like |ACP-like |Peptidyl carrier domain |Peptidyl carrier protein (PCP), thioester domain |Bacillus brevis [TaxId: 1393]
d1xyxa_ : (PRO137) (TYR157) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d1mu4a_ : (THR59) (GLU83) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d2fgea1 : (CYS758) (LEU783) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1m1na_ : (ILE436) (LEU475) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Azotobacter vinelandii [TaxId: 354]
d1k8qa_ : (ARG106) (ALA120) [view usage] : c.69.1.6 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Gastric lipase |Gastric lipase |Dog (Canis familiaris) [TaxId: 9615]
d3s7rb_ : (GLY69) (GLY93) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xsfa_ : (ASN40) (GLY64) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3iwpa_ : (VAL197) (GLY217) [view usage] : c.1.30.0 |TIM beta/alpha-barrel |CutC-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wq4a_ : (GLY418) (TYR440) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Camellia sinensis [TaxId: 4442]
d3ue2a_ : (THR462) (GLY491) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b05a_ : (ARG413) (ASN437) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, c.2, d.58, c.68, c.56, c.92, e.22, c.23, d.144, b.40, c.37, d.185, c.55, d.166, d.153, b.60, d.14, d.3,
c.85, d.38, c.25, d.41, d.128, d.15, d.42, d.54, d.6, d.94, e.38, d.112, a.28, d.308, d.101, c.150, d.47, d.103