Tableau information
Concept source: d1a88a_ amino acid (a.a.) range (ALA90)(ALA115)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA90) (SER96) E1
(GLY98) (ARG108) H2
(GLU110) (ALA115) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -145.0° H2
H3 -74.7° -133.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2rc9b_ : (PHE171) (MET196) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4kcdb_ : (PHE171) (MET196) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4nf8b_ : (PHE164) (ASN193) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2o36a_ : (LEU215) (SER246) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Human (Homo sapiens) [TaxId: 9606]
d3o5wa_ : (GLU2) (VAL54) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |European mistletoe (Viscum album) [TaxId: 3972]
d2voca_ : (VAL19) (LYS51) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1v98b_ : (PRO51) (LYS84) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1eyza2 : (HIS77) (THR111) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Glycinamide ribonucleotide transformylase PurT, N-domain |Escherichia coli [TaxId: 562]
d1gwba_ : (PRO214) (GLN263) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d4kqob2 : (ARG338) (ILE361) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1nfpa_ : (THR2) (VAL45) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium leiognathi [TaxId: 553611]
d2p4nb1 : (ARG2) (ARG48) [view usage] : i.10.1.1 |Microtubule complexes |Microtubule complexes |Microtubule complexes |Tubulin:stathmin-like domain complex |Cow (Bos taurus) [TaxId: 9913]
d3bjuc2 : (ILE495) (GLY540) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zfzb3 : (GLY451) (GLY475) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 158878]
d3zzfa_ : (SER285) (LEU320) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1uuba_ : (ASN41) (ALA56) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d3bjub2 : (ILE495) (GLY540) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hwma_ : (SER5) (VAL55) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ebulin A-chain |Sambucus ebulus [TaxId: 28503]
d4i50b1 : (ARG2) (ILE49) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1bbua2 : (ILE422) (HIS466) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
d2rg9a_ : (LEU4) (VAL54) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |European mistletoe (Viscum album) [TaxId: 3972]
d4kqoa2 : (ARG338) (ILE361) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2hxfb1 : (ARG2) (ARG48) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Pig (Sus scrofa) [TaxId: 9823]
d1keza_ : (ASP169) (TRP216) [view usage] : c.69.1.22 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterase domain of polypeptide, polyketide and fatty acid synthases |Erythromycin polyketide synthase |Saccharopolyspora erythraea [TaxId: 1836]
d3froa_ : (VAL250) (GLU283) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1jffb1 : (ARG2) (ARG48) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Cow (Bos taurus) [TaxId: 9913]
d1b5ta_ : (VAL205) (MET238) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Escherichia coli [TaxId: 562]
d3w67a2 : (ILE194) (ILE222) [view usage] : c.13.1.1 |SpoIIaa-like |CRAL/TRIO domain |CRAL/TRIO domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4kfqb_ : (LYS170) (ASN202) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2i5ia1 : (GLU206) (PRO230) [view usage] : c.6.2.8 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |YdjC-like |Uncharacterized protein EF3048 |Enterococcus faecalis [TaxId: 1351]
d1y20a_ : (LYS170) (GLU199) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pukg_ : (PRO27) (ALA59) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
d2qesa_ : (VAL1) (VAL50) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Phytolacca dioica [TaxId: 29725]
d1z2bb1 : (ARG2) (TYR53) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Cow (Bos taurus) [TaxId: 9913]
d1s4cb_ : (MET1) (ASN27) [view usage] : b.82.2.7 |Double-stranded beta-helix |Clavaminate synthase-like |YhcH-like |Hypothetical protein HI0227 |Haemophilus influenzae [TaxId: 727]
d1m55a_ : (GLN163) (SER193) [view usage] : d.89.1.3 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |Replication protein Rep, nuclease domain |Replication protein Rep, nuclease domain |Adeno-associated virus, aav-5 [TaxId: 272636]
d1nioa_ : (ASN2) (ILE49) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Beta-luffin |Smooth loofah (Luffa cylindrica) [TaxId: 3670]
d4kfqa_ : (LYS170) (ASN202) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3svla_ : (ASP74) (LYS109) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2b5ya_ : (PRO31) (ASN63) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.10, b.82, c.69, c.94, c.6, d.92, d.165, c.23, d.104, c.47, c.87, c.32, c.13, c.73, i.10, c.30, d.89, g.8