Tableau information
Concept source: d4aiaa_ amino acid (a.a.) range (LYS125)(ALA168)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS125) (HIS131) E1
(ASP139) (GLY153) H2
(PRO159) (ALA168) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -130.3° H2
H3 -91.4° 107.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bkra_ : (PRO155) (LYS211) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xzms_ : (GLU106) (MET126) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2g64a1 : (ILE6) (GLY43) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |6-pyruvoyl tetrahydropterin synthase |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2c6qb_ : (LEU72) (HIS98) [view usage] : c.1.5.0 |TIM beta/alpha-barrel |Inosine monophosphate dehydrogenase (IMPDH) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a1sa1 : (GLY6) (GLY37) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Pyrococcus furiosus [TaxId: 2261]
d1euva_ : (CYS571) (ASP618) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Ulp1 protease C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3j38p_ : (ASP104) (LEU124) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1m6ja_ : (PHE6) (VAL40) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1fb5a1 : (GLY39) (GLY71) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Sheep (Ovis aries) [TaxId: 9940]
d3r7da1 : (MET1) (SER27) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4aiaa_ : (LYS125) (ALA168) [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3iifc_ : (ASP210) (GLY250) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
d1rqua2 : (GLU53) (ALA90) [view usage] : d.45.1.1 |ClpS-like |ClpS-like |Ribosomal protein L7/12, C-terminal domain |Ribosomal protein L7/12, C-terminal domain |Escherichia coli [TaxId: 562]
d2hsxa_ : (LEU5) (ASN37) [view usage] : d.346.1.1 |SARS Nsp1-like |SARS Nsp1-like |SARS Nsp1-like |Nsp1 |SARS coronavirus [TaxId: 227859]
d3r77b_ : (PRO72) (GLY95) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Phenazine biosynthesis protein PhzD |Pseudomonas fluorescens [TaxId: 294]
d2oq4a2 : (SER106) (ARG124) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1akma1 : (HIS5) (GLY36) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Escherichia coli [TaxId: 562]
d2w37a1 : (GLY12) (GLY43) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Lactobacillus hilgardii [TaxId: 1588]
d1rqsa_ : (THR52) (ALA90) [view usage] : d.45.1.1 |ClpS-like |ClpS-like |Ribosomal protein L7/12, C-terminal domain |Ribosomal protein L7/12, C-terminal domain |Escherichia coli [TaxId: 562]
d1eg9a1 : (TRP106) (GLY134) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Naphthalene 1,2-dioxygenase alpha subunit, N-domain |Pseudomonas putida [TaxId: 303]
d2gdta1 : (LEU5) (ASN37) [view usage] : d.346.1.1 |SARS Nsp1-like |SARS Nsp1-like |SARS Nsp1-like |Nsp1 |SARS coronavirus [TaxId: 227859]
d3zqda1 : (LEU5) (ASN33) [view usage] : d.7.1.0 |LysM domain |LysM domain |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2otca1 : (HIS5) (GLY36) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Escherichia coli [TaxId: 562]
d4oqoa_ : (LYS454) (SER488) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Cow (Bos taurus) [TaxId: 9913]
d3d6nb1 : (MET1) (GLY28) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1blle1 : (LYS2) (SER42) [view usage] : c.50.1.1 |Macro domain-like |Macro domain-like |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1ctfa_ : (GLU53) (ALA90) [view usage] : d.45.1.1 |ClpS-like |ClpS-like |Ribosomal protein L7/12, C-terminal domain |Ribosomal protein L7/12, C-terminal domain |Escherichia coli [TaxId: 562]
d2be7a1 : (ARG7) (GLU33) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Moritella profunda [TaxId: 111291]
d1dd3a2 : (GLU58) (ALA95) [view usage] : d.45.1.1 |ClpS-like |ClpS-like |Ribosomal protein L7/12, C-terminal domain |Ribosomal protein L7/12, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3gg7a_ : (LEU190) (THR242) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1c9ya1 : (GLY39) (GLY71) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d1cb7b_ : (LEU431) (ILE470) [view usage] : c.1.19.2 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Glutamate mutase, large subunit |Glutamate mutase, large subunit |Clostridium cochlearium [TaxId: 1494]
d1yd9c_ : (ASP34) (LYS72) [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1yg6n_ : (ASN116) (ASP167) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |automated matches |Escherichia coli [TaxId: 562]
d4jhxb1 : (ASN7) (GLY38) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Vibrio vulnificus [TaxId: 216895]
d1nf9a_ : (GLN72) (GLY95) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Phenazine biosynthesis protein PhzD |Pseudomonas aeruginosa [TaxId: 287]
d2fkia1 : (ARG45) (SER79) [view usage] : d.198.3.1 |Secretion chaperone-like |YjbR-like |YjbR-like |Hypothetical protein YjbR |Escherichia coli [TaxId: 562]
d3tg2a_ : (PRO71) (TRP93) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1rtta_ : (ASP74) (SER107) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |Hypothetical protein PA1204 |Pseudomonas aeruginosa [TaxId: 287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, i.1, c.14, c.23, d.3, a.96, d.96, c.78, c.50, c.33, b.113, b.33, d.45, d.198, d.346, d.7