Tableau information
Concept source: d3g25a1 amino acid (a.a.) range (GLY93)(GLY128)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY93) (TYR97) E1
(VAL101) (GLY118) H2
(GLU120) (GLY128) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 70.7° H2
H3 -141.3° 124.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (SER216) (PHE261) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d3tqua_ : (LEU66) (ASP110) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d1wydb2 : (HIS394) (VAL418) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1ltle_ : (ARG37) (PRO61) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1f8ma_ : (LYS342) (GLY387) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d2rj2a_ : (CYS180) (ASP199) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3zwma_ : (ILE1) (PHE45) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2zyna_ : (GLN95) (THR116) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d1y7ba1 : (PRO487) (GLY508) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
d1ebla2 : (HIS204) (ASP239) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
d1xbna_ : (GLU41) (GLN73) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d3qmne_ : (ALA0) (ILE30) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1s7ia_ : (GLN4) (GLY46) [view usage] : d.58.4.9 |Ferredoxin-like |Dimeric alpha+beta barrel |DGPF domain (Pfam 04946) |Hypothetical protein PA1349 |Pseudomonas aeruginosa [TaxId: 287]
d3fa7a_ : (ASN6) (ALA32) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d3qmnx_ : (GLY4) (ILE30) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1kywa1 : (GLY54) (MET80) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2mpfa_ : (LEU630) (ILE663) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fa9a_ : (ASN6) (VAL33) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d3i17a_ : (ASN6) (ALA34) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d3mm1a_ : (SER216) (PHE261) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2cbna1 : (PHE37) (ASP58) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d1e4oa_ : (LEU352) (PRO387) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d2m3da_ : (GLY20) (LYS53) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gxdc_ : (ASP102) (SER117) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d1ftea_ : (GLY1006) (VAL1031) [view usage] : d.150.1.2 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |Holo-(acyl carrier protein) synthase ACPS |Holo-(acyl carrier protein) synthase ACPS |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3qmna_ : (GLY4) (ILE30) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3vodb_ : (ARG94) (LEU143) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1z2ia_ : (THR9) (GLY49) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d2ebfx1 : (LYS743) (LYS787) [view usage] : a.296.1.1 |PMT central region-like |PMT central region-like |PMT central region-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d3fa8a_ : (ASN6) (ALA34) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d4l11a_ : (ASP696) (SER722) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d2fug12 : (PRO215) (GLN240) [view usage] : c.142.1.1 |Nqo1 FMN-binding domain-like |Nqo1 FMN-binding domain-like |Nqo1 FMN-binding domain-like |NADH-quinone oxidoreductase chain 1, Nqo1 |Thermus thermophilus [TaxId: 274]
d3qmns_ : (GLY4) (ILE30) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1r0sa_ : (ILE1) (PHE45) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d1w36c3 : (GLU830) (GLN854) [view usage] : c.52.1.25 |Restriction endonuclease-like |Restriction endonuclease-like |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Escherichia coli [TaxId: 562]
d1yi7a1 : (PRO487) (GLY508) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
d1c7ga_ : (ALA344) (PHE361) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |Tyrosine phenol-lyase |Erwinia herbicola [TaxId: 549]
d3zwna_ : (ALA-1) (PHE45) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1ne4a2 : (GLY341) (TYR371) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Cow (Bos taurus) [TaxId: 9913]
d3i9ka_ : (ILE1) (PHE45) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2i6ua1 : (VAL1) (ARG34) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1f48a1 : (SER72) (SER110) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Arsenite-translocating ATPase ArsA |Escherichia coli [TaxId: 562]
d1y7bb1 : (PRO487) (GLY508) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Clostridium acetobutylicum [TaxId: 1488]
d3zwpa_ : (ILE1) (SER46) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2zyoa_ : (GLN95) (THR116) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d1mzoa_ : (VAL603) (GLY643) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d3r20a_ : (ASP143) (THR188) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.67, c.94, d.58, b.29, d.157, c.23, b.40, c.37, c.7, d.104, c.55, c.95, b.60, b.18, c.87, c.78, d.278, c.51,
c.122, c.52, a.4, d.150, c.142, a.296