Tableau information
Concept source: d1uw3a_ amino acid (a.a.) range (ASN159)(GLY195)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN159) (ARG164) E1
(PRO165) (SER170) H2
(ASN171) (GLY195) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 63.9° H2
H3 122.3° 125.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o68b_ : (GLY208) (LYS252) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Neisseria meningitidis [TaxId: 487]
d2qgxd_ : (GLY101) (LYS134) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4awzc_ : (LEU222) (LEU254) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2trcp_ : (ILE198) (GLY225) [view usage] : c.47.1.6 |Thioredoxin fold |Thioredoxin-like |Phosducin |Phosducin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ft8c2 : (ASN118) (CYS143) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d3g1qa_ : (PRO33) (LYS64) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3eg4a_ : (CYS261) (LEU282) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Brucella suis [TaxId: 29461]
d2edza_ : (ASN87) (GLN114) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1zq7b_ : (TYR136) (ALA164) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Methanosarcina mazei [TaxId: 2209]
d1jala2 : (ILE317) (GLY340) [view usage] : d.15.10.2 |beta-Grasp (ubiquitin-like) |TGS-like |G domain-linked domain |YchF GTP-binding protein, C-terminal domain |Haemophilus influenzae [TaxId: 727]
d2ohfa2 : (ILE343) (GLY366) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yhka_ : (ALA344) (GLY375) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d4v1am_ : (THR60) (ARG110) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1wscb_ : (TYR153) (ALA180) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d3mxua_ : (VAL74) (TRP96) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d3vofa_ : (GLY18) (ILE56) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1kooa2 : (ASN118) (CYS143) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d2b2ta1 : (ILE58) (LEU105) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |ATP-dependent helicase CHD1 (Chromo domain protein 1) |Human (Homo sapiens) [TaxId: 9606]
d1t2vd1 : (LYS1711) (GLU1735) [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
d1e10a_ : (PRO1) (ASP22) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Halobacterium halobium [TaxId: 2242]
d1xbrb_ : (CYS120) (LYS136) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2g0wa1 : (LYS10) (GLY37) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein Lmo2234 |Listeria monocytogenes [TaxId: 1639]
d4b2bb_ : (GLY4) (TYR24) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1szna2 : (VAL11) (SER40) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Trichoderma reesei [TaxId: 51453]
d2b2va2 : (ILE58) (LEU105) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |ATP-dependent helicase CHD1 (Chromo domain protein 1) |Human (Homo sapiens) [TaxId: 9606]
d2y9na_ : (ARG55) (ASN86) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |automated matches |Hypocrea lixii [TaxId: 5544]
d4guza_ : (ASN39) (SER67) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1z3ix2 : (LEU133) (GLY164) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d2dbya2 : (ILE322) (GLY345) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2dwqa2 : (ILE322) (ARG344) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2b0ca1 : (VAL19) (SER44) [view usage] : c.108.1.2 |HAD-like |HAD-like |YihX-like |Putative phosphatase YihX |Escherichia coli [TaxId: 562]
d1yrva1 : (GLY86) (ASN118) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 U [TaxId: 9606]
d3gw9b_ : (PRO32) (LYS64) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4a05a_ : (GLY123) (VAL158) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1t82a_ : (GLU33) (ASN75) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Putative thioesterase SO4397 |Shewanella oneidensis [TaxId: 70863]
d1m3ua_ : (ASP209) (GLY254) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Escherichia coli [TaxId: 562]
d2ccda1 : (GLU318) (TYR337) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3hmka_ : (ASP258) (LEU294) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xbra_ : (CYS120) (MET135) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1u8xx1 : (ASP81) (ARG123) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Maltose-6'-phosphate glucosidase GlvA |Bacillus subtilis [TaxId: 1423]
d4kfqb_ : (GLY145) (PRO167) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1y16a_ : (ASN159) (THR192) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d4foxh_ : (LYS48) (GLY76) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1koha2 : (ASN118) (SER143) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1y20a_ : (GLY145) (PRO167) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3vavh_ : (GLY218) (GLY262) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2g0wb_ : (LYS10) (GLY37) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein Lmo2234 |Listeria monocytogenes [TaxId: 1639]
d3tuic1 : (CYS210) (PHE240) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ft8a2 : (ASN118) (CYS143) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d2czra1 : (GLY190) (SER218) [view usage] : c.52.4.1 |Restriction endonuclease-like |TBP-interacting protein-like |TBP-interacting protein-like |TBP-interacting protein |Thermococcus kodakaraensis [TaxId: 311400]
d1rf8a_ : (ASN40) (LEU62) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2xzmz_ : (GLY62) (GLY91) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4b2ab_ : (SER5) (TYR24) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d2ejqa1 : (ILE68) (ASP108) [view usage] : d.92.1.17 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TTHA0227-like |Uncharacterized protein TTHA0227 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, b.81, c.94, a.104, c.2, c.6, d.58, i.1, c.108, c.79, b.29, d.157, d.117, d.92, a.93, c.37, c.47, d.3, b.2,
d.20, d.38, b.84, c.52, b.34, d.15, d.6, d.86, c.15, b.36, d.40, d.309