Tableau information
Concept source: d4nd7a_ amino acid (a.a.) range (ALA100)(THR125)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA100) (TYR104) E1
(GLY105) (ASP111) H2
(ASP111) (THR125) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 51.6° H2
H3 -81.5° -75.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ob9c_ : (ILE49) (ALA92) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rxqa_ : (PRO88) (THR106) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d2do8a1 : (ILE41) (ALA61) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein HD1794 |Haemophilus ducreyi [TaxId: 730]
d3rzva_ : (ARG255) (GLY278) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d4mita_ : (PRO116) (GLY140) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Entamoeba histolytica [TaxId: 885315]
d1d2ra_ : (ALA75) (VAL97) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d3kkkb_ : (PRO123) (PRO144) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Plasmodium falciparum [TaxId: 36329]
d3dkca_ : (THR1217) (MET1250) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Hepatocyte growth factor receptor, c-MET |Human (Homo sapiens) [TaxId: 9606]
d1n1ha_ : (PRO578) (ALA611) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Reovirus polymerase lambda3 |Reovirus [TaxId: 10891]
d1no3a2 : (HIS10) (THR30) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d2d1pd_ : (GLY72) (LEU96) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein D, TusD |Escherichia coli [TaxId: 562]
d2znra_ : (ARG267) (GLY290) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ej8a_ : (TRP372) (GLY400) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dika1 : (GLY558) (SER581) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d3rzue_ : (ARG255) (GLY278) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d2bv9a1 : (TRP103) (TYR121) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase H N-terminal domain |Clostridium thermocellum [TaxId: 1515]
d2gvia1 : (ALA98) (GLY125) [view usage] : d.81.3.1 |FwdE/GAPDH domain-like |FwdE-like |FwdE-like |Uncharacterized protein Ta1109 |Thermoplasma acidophilum [TaxId: 2303]
d1rqea2 : (ARG12) (LEU28) [view usage] : c.1.10.5 |TIM beta/alpha-barrel |Aldolase |HMGL-like |Transcarboxylase 5S subunit, N-terminal domain |Propionibacterium freudenreichii shermanii [TaxId: 1752]
d2hy5a1 : (GLU72) (ARG95) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Sulfurtransferase DsrE |Chromatium vinosum [TaxId: 1049]
d1rxqd_ : (PRO88) (THR106) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d1bbua2 : (THR471) (PRO498) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
d3rzuc_ : (ARG255) (GLY278) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1pkua1 : (ILE117) (GLY137) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Rice (Oryza sativa) [TaxId: 4530]
d1rxqb_ : (PRO88) (THR106) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d1bmfd3 : (VAL251) (GLY273) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of beta subunit of F1 ATP synthase |Cow (Bos taurus) [TaxId: 9913]
d3a9ba_ : (GLY18) (GLY42) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1pkub_ : (ILE117) (GLY137) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Rice (Oryza sativa) [TaxId: 4530]
d1r8wa_ : (GLY662) (VAL687) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d2hldd2 : (VAL251) (GLY273) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2znva_ : (ARG267) (GLY290) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rrha2 : (ARG8) (THR30) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d1ej6d_ : (ASP122) (PRO137) [view usage] : i.7.1.1 |Reovirus components |Reovirus components |Reovirus components |Reovirus core |Reovirus sp. [TaxId: 10891]
d2f5kf_ : (GLN39) (GLU86) [view usage] : b.34.13.3 |SH3-like barrel |Chromo domain-like |Chromo barrel domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oxva_ : (ILE230) (THR275) [view usage] : c.52.1.1 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRI |automated matches |Escherichia coli [TaxId: 562]
d1yi8a_ : (THR97) (VAL119) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d1u2mc_ : (LYS23) (MSE74) [view usage] : f.48.1.1 |OmpH-like |OmpH-like |OmpH-like |Periplasmic chaperon skp (HlpA) |Escherichia coli [TaxId: 562]
d1ebda3 : (VAL375) (ASN392) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Dihydrolipoamide dehydrogenase |Bacillus stearothermophilus [TaxId: 1422]
d3rzua_ : (ARG255) (GLY278) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d3f9ra_ : (ILE177) (PHE199) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3oehd2 : (VAL251) (GLY273) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1guba_ : (GLN171) (LYS195) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |D-allose-binding protein |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.6, d.58, c.108, c.26, c.93, d.144, c.37, c.7, d.104, d.81, c.60, d.174, c.97, c.52, d.87, b.34, b.12, f.48,
c.114, d.310, i.7, a.213