Tableau information
Concept source: d1nwla_ amino acid (a.a.) range (GLN166)(GLY209)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN166) (TYR176) E1
(SER190) (GLU200) H2
(GLY202) (GLY209) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 163.4° H2
H3 -147.5° 36.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fg3a_ : (ALA179) (TYR203) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Escherichia coli [TaxId: 562]
d2c49b_ : (GLU132) (LEU156) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3nv7a_ : (LYS3) (PHE29) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d4dg5a_ : (PRO193) (ALA217) [view usage] : c.86.1.0 |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282458]
d2h1ba_ : (GLY64) (GLY95) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d2jf6b_ : (MET419) (GLY456) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rauvolfia serpentina [TaxId: 4060]
d3us3a1 : (ARG14) (LYS29) [view usage] : c.47.1.3 |Thioredoxin fold |Thioredoxin-like |Calsequestrin |Calsequestrin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1phpa_ : (PRO188) (LYS211) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Bacillus stearothermophilus [TaxId: 1422]
d2js7a_ : (ILE127) (LEU151) [view usage] : c.23.2.0 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wzr3_ : (LEU74) (LYS87) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Foot-and-mouth disease virus [TaxId: 12122]
d3ojca1 : (LYS3) (GLY32) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d3o6ta_ : (LYS26) (ARG54) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2m1ra_ : (GLU208) (GLU220) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c49a_ : (GLU132) (LEU156) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1eyya_ : (GLY138) (GLY166) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d2p6ba_ : (VAL85) (ARG112) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d3ck2a1 : (LYS3) (VAL30) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Uncharacterized protein SP1879 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1esgb_ : (VAL188) (GLU211) [view usage] : c.52.1.3 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BamHI |Restriction endonuclease BamHI |Bacillus amyloliquefaciens [TaxId: 1390]
d2ynma_ : (ASN169) (LYS200) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Prochlorococcus marinus [TaxId: 1219]
d4dalg_ : (VAL142) (GLY166) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1eyyb_ : (GLY138) (GLY166) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d1n9la_ : (THR21) (GLN61) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |Putative blue light receptor, phot-lov1 domain |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1staa_ : (ALA112) (LYS136) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1nr3a_ : (VAL50) (ALA93) [view usage] : d.236.1.1 |DNA-binding protein Tfx |DNA-binding protein Tfx |DNA-binding protein Tfx |DNA-binding protein Tfx |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2g4ca1 : (VAL383) (GLY410) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1lqga_ : (HIS180) (GLY214) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Escherichia coli [TaxId: 562]
d1dfji_ : (MET1) (TYR25) [view usage] : c.10.1.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |28-residue LRR |Ribonuclease inhibitor |Pig (Sus scrofa) [TaxId: 9823]
d1q1ma_ : (LEU172) (GLY209) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), 1B [TaxId: 9606]
d2okvb_ : (GLY26) (GLN71) [view usage] : c.110.1.0 |DTD-like |DTD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1euha_ : (LEU146) (GLY171) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Streptococcus mutans [TaxId: 1309]
d1f07a_ : (CYS206) (SER231) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3hyla3 : (GLU629) (LEU666) [view usage] : c.48.1.0 |TK C-terminal domain-like |TK C-terminal domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1jfua_ : (THR62) (LYS88) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Membrane-anchored thioredoxin-like protein TlpA, soluble domain |Bradyrhizobium japonicum [TaxId: 375]
d1zfna_ : (PHE154) (THR186) [view usage] : c.111.1.0 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2bgla_ : (VAL100) (LYS144) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mayapple (Podophyllum peltatum) [TaxId: 35933]
d3rhma_ : (CYS567) (GLY591) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3gdra_ : (ASN91) (ARG111) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3gdka_ : (ASP91) (TRP115) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1cz3a_ : (LYS2) (GLY39) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.2, d.159, c.82, c.26, c.45, c.72, c.23, b.40, c.37, c.18, c.47, c.86, b.121, c.71, c.78, d.110, c.51,
c.111, c.52, c.48, c.110, g.50, d.236