Tableau information
Concept source: d1vlca_ amino acid (a.a.) range (ASN103)(GLY125)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN103) (VAL109) E1
(TYR110) (SER117) H2
(LYS120) (GLY125) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -89.8° H2
H3 -118.9° 134.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a7ya1 : (VAL57) (ALA75) [view usage] : b.34.6.3 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Rv2302-like |Hypothetical protein Rv2302/MT2359 |Mycobacterium tuberculosis [TaxId: 1773]
d3asva_ : (GLY178) (THR200) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2c49b_ : (LEU156) (THR180) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1yuda1 : (ASP131) (LEU154) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein SO0799 |Shewanella oneidensis [TaxId: 70863]
d1sqha_ : (GLU173) (ARG207) [view usage] : d.108.1.5 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Hypothetical protein cg14615-pa |Hypothetical protein cg14615-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3jw0d_ : (TYR671) (GLY704) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1syga_ : (LEU38) (ALA69) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1anfa_ : (ALA77) (ARG98) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d3obfa_ : (GLY178) (GLY208) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d1u6ia_ : (LYS180) (VAL223) [view usage] : c.127.1.1 |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |Methanopyrus kandleri [TaxId: 2320]
d1xvxa_ : (ARG135) (ASN171) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Yersinia enterocolitica, YfuA [TaxId: 630]
d1xrua1 : (MET1) (ASN22) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d3djnb_ : (CYS67) (ARG94) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1hyoa2 : (ASP123) (LEU155) [view usage] : d.177.1.1 |FAH |FAH |FAH |Fumarylacetoacetate hydrolase, FAH, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1deva_ : (ILE384) (CYS412) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad2 MH2 domain |Human (Homo sapiens) [TaxId: 9606]
d3s4tc_ : (GLY3) (ILE39) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |automated matches |Polaromonas sp. [TaxId: 296591]
d2guya2 : (ASN121) (HIS147) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus oryzae, Taka-amylase [TaxId: 5062]
d2c49a_ : (LEU156) (THR180) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1xrub_ : (SER-1) (ASN22) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d4ne4a_ : (TYR60) (ALA82) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d2heqa1 : (ALA17) (ARG34) [view usage] : b.34.20.1 |SH3-like barrel |YorP-like |YorP-like |Uncharacterized protein YorP |Bacillus subtilis [TaxId: 1423]
d3loia_ : (PHE145) (CYS167) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Branchiostoma belcheri [TaxId: 155462]
d3n2ib_ : (ASP97) (ALA125) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Vibrio cholerae [TaxId: 243277]
d3iu1b2 : (TYR296) (LEU326) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4cava2 : (TYR263) (ASN294) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Aspergillus fumigatus [TaxId: 746128]
d1xfja_ : (TYR172) (PHE193) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein CC0490 |Caulobacter crescentus [TaxId: 155892]
d4npcb_ : (THR194) (ILE217) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]
d1o7ta_ : (ARG132) (TYR168) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d3fs1a_ : (ASP239) (LEU263) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gg4a_ : (THR310) (ALA336) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1cnza_ : (PHE105) (ASN130) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Salmonella typhimurium [TaxId: 90371]
d2cwea1 : (ASP84) (GLU150) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d3tgva_ : (VAL98) (LEU130) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d2a0aa1 : (GLY6) (ALA33) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Der f 13 allergen |House dust mite (Dermatophagoides farinae) [TaxId: 6954]
d1rxta2 : (TYR219) (ARG251) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Human (Homo sapiens) [TaxId: 9606]
d2pxzx2 : (LYS70) (PHE82) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d3qypb_ : (LYS6) (GLY35) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1iica2 : (TYR219) (ASN250) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1t0ia_ : (LYS39) (LEU85) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |Hypothetical protein Ylr011wp |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3tv5a1 : (TYR1655) (LEU1676) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3djub_ : (CYS67) (LEU95) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qv9a_ : (LYS180) (VAL223) [view usage] : c.127.1.1 |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |Methanopyrus kandleri [TaxId: 2320]
d4c2xa2 : (TYR296) (ARG328) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qcna2 : (ASP123) (LEU155) [view usage] : d.177.1.1 |FAH |FAH |FAH |Fumarylacetoacetate hydrolase, FAH, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3e9va1 : (CYS68) (LEU96) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |NGF-inducible anti-proliferative protein PC3 (BTG2) |Human (Homo sapiens) [TaxId: 9606]
d3s4ta_ : (GLY3) (ASP38) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |automated matches |Polaromonas sp. [TaxId: 296591]
d3j38t_ : (SER68) (ARG111) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2h1ca1 : (VAL33) (ALA72) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Trafficking protein B |Neisseria gonorrhoeae [TaxId: 485]
d4egfa_ : (THR198) (ILE222) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1ltka_ : (ILE367) (SER389) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1k3ca2 : (LYS70) (PHE82) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d1mdqa_ : (ALA77) (ARG98) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1ulya_ : (ASP84) (LYS149) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d4qkub2 : (GLY138) (MET170) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1iyka2 : (TYR225) (TYR256) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
d1hyob2 : (ASP623) (LEU655) [view usage] : d.177.1.1 |FAH |FAH |FAH |Fumarylacetoacetate hydrolase, FAH, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4npca_ : (THR194) (ILE217) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]
d3uora_ : (ILE185) (GLY235) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1j1wa_ : (ASN79) (LYS130) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |NADP-dependent isocitrate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.94, d.68, c.2, i.1, c.108, c.77, c.14, c.72, c.23, b.40, c.37, c.86, b.60, d.194, b.45, a.123, d.108, d.110,
c.109, d.177, c.120, b.26, b.34, a.4, d.148, c.127, d.370