Tableau information
Concept source: d2f90a_ amino acid (a.a.) range (MET8)(ASN49)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET8) (GLY14) E1
(GLY14) (ASN20) H2
(ASN31) (ASN49) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -75.8° H2
H3 147.0° 112.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2htmc_ : (ASP202) (LEU235) [view usage] : c.1.31.0 |TIM beta/alpha-barrel |ThiG-like |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d3dc5a2 : (LEU151) (ALA175) [view usage] : d.44.1.0 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2a5yc1 : (GLN283) (SER327) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CED-4, NB-ARC domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4hgxa_ : (TYR242) (VAL267) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
d2hy5b1 : (ILE280) (VAL298) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Intracellular sulfur oxidation protein DsrF |Chromatium vinosum [TaxId: 1049]
d1qlwa_ : (GLY281) (ASN320) [view usage] : c.69.1.15 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |A novel bacterial esterase |A novel bacterial esterase |Alcaligenes sp. [TaxId: 512]
d2al2a1 : (ASN422) (LEU436) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hqxa_ : (LYS196) (LEU220) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2wkwa_ : (GLY281) (ASN320) [view usage] : c.69.1.15 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |A novel bacterial esterase |automated matches |Alcaligenes sp. [TaxId: 512]
d1ebga1 : (ASN422) (LEU436) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1q23b_ : (CYS31) (ALA69) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d2m6ra_ : (MET122) (SER149) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli [TaxId: 469008]
d1wdkc1 : (ASP12) (SER47) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) |Pseudomonas fragi [TaxId: 296]
d1k8kf_ : (ILE114) (PHE168) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d1p8oa_ : (LYS196) (TYR218) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3hmkb_ : (ASP258) (LEU294) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1iwga5 : (MET184) (ALA209) [view usage] : d.225.1.1 |Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains |Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains |Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains |Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains |Escherichia coli [TaxId: 562]
d1po3a_ : (ALA103) (ASN125) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1t5fa1 : (LYS196) (TYR218) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4r9oa_ : (ARG16) (GLY45) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Salmonella enterica [TaxId: 99287]
d3qy3a1 : (HIS8) (GLY46) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical protein PA2801 |Pseudomonas aeruginosa [TaxId: 287]
d1p48a1 : (ASN422) (LEU436) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1h45a_ : (SER154) (PHE190) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3j38v_ : (LYS51) (GLY77) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4a61a1 : (ILE98) (LYS128) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Escherichia coli [TaxId: 562]
d2aeua1 : (LEU343) (PHE372) [view usage] : c.67.1.8 |PLP-dependent transferase-like |PLP-dependent transferases |SelA-like |Hypothetical protein MJ0158 |Methanococcus jannaschii [TaxId: 2190]
d3ecfa1 : (VAL102) (GLY126) [view usage] : d.17.4.21 |Cystatin-like |NTF2-like |Ava4193-like |Uncharacterized protein Ava4193 |Anabaena variabilis [TaxId: 1172]
d1kmoa_ : (ALA103) (ARG126) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d2g0wa1 : (MSE245) (ALA277) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein Lmo2234 |Listeria monocytogenes [TaxId: 1639]
d1xvxa_ : (VAL228) (GLY254) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Yersinia enterocolitica, YfuA [TaxId: 630]
d1dika1 : (PHE762) (LYS793) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2d1oa_ : (PHE210) (TYR246) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
d1i60a_ : (VAL242) (VAL272) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein IolI |Bacillus subtilis [TaxId: 1423]
d4tu1b_ : (GLN312) (LEU355) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Toxoplasma gondii [TaxId: 5811]
d1p43a1 : (ASN422) (LEU436) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ceya_ : (TYR216) (GLY264) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d3dblb_ : (LYS388) (GLY416) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1tyqf_ : (ASP113) (PHE168) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d4ffka2 : (LEU174) (SER198) [view usage] : d.44.1.0 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |automated matches |automated matches |Acidilobus saccharovorans [TaxId: 666510]
d2q02b_ : (ALA242) (LEU270) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
d3hu3a2 : (LYS112) (LEU140) [view usage] : d.31.1.0 |Cdc48 domain 2-like |Cdc48 domain 2-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oiwa1 : (MSE1) (PRO41) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |GK1870 orthologue |Bacillus stearothermophilus [TaxId: 1422]
d1buda_ : (PHE4) (LYS48) [view usage] : d.92.1.9 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Reprolysin-like |Snake venom metalloprotease |Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]
d1ckva_ : (LYS84) (LEU106) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Soluble methane monooxygenase regulatory protein B |Escherichia coli [TaxId: 562]
d1v4vb_ : (PRO199) (PHE228) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d1vpna_ : (ARG182) (VAL207) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |Polyomavirus coat proteins |Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]
d1ta8a_ : (VAL170) (GLN211) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d2cbna1 : (PRO156) (GLY181) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d1qlwb_ : (GLY281) (ASN320) [view usage] : c.69.1.15 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |A novel bacterial esterase |A novel bacterial esterase |Alcaligenes sp. [TaxId: 512]
d3gboa_ : (SER2) (TYR42) [view usage] : d.92.1.9 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Reprolysin-like |automated matches |Bothrops moojeni [TaxId: 98334]
d1p8ma_ : (LYS196) (TYR218) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hkqa_ : (LEU46) (ARG78) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |Replication protein A, repA |Pseudomonas syringae pv. savastanoi [TaxId: 29438]
d4kdla2 : (LYS112) (LEU140) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Human (Homo sapiens) [TaxId: 9606]
d1jjka_ : (LEU124) (GLY162) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Escherichia coli [TaxId: 562]
d2glvb_ : (GLN40) (GLY88) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Helicobacter pylori [TaxId: 210]
d1vbga1 : (PHE767) (GLN797) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Maize (Zea mays) [TaxId: 4577]
d2j00s1 : (PRO59) (PRO76) [view usage] : d.28.1.1 |Ribosomal protein S19 |Ribosomal protein S19 |Ribosomal protein S19 |Ribosomal protein S19 |Thermus thermophilus [TaxId: 274]
d2cexd_ : (TYR216) (GLY264) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d1otea_ : (LEU40) (ILE58) [view usage] : d.110.3.1 |Profilin-like |PYP-like sensor domain (PAS domain) |PYP-like |Photoactive yellow protein, PYP |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d2fuha_ : (ASN81) (CYS111) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bycb_ : (SER593) (LEU631) [view usage] : d.58.10.2 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |BLUF domain |Blue light receptor BlrB |Rhodobacter sphaeroides [TaxId: 1063]
d2g0wb_ : (MSE245) (ALA277) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein Lmo2234 |Listeria monocytogenes [TaxId: 1639]
d3wjaa1 : (LEU133) (ASN148) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q02a1 : (ALA242) (LEU270) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
d3ljta_ : (ARG265) (HIS304) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4j52a_ : (ALA80) (LEU108) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lsya_ : (LYS3) (LYS37) [view usage] : d.298.1.2 |RelE-like |RelE-like |RelE-like |automated matches |Helicobacter pylori [TaxId: 85962]
d1eb6a_ : (ASN98) (ALA133) [view usage] : d.92.1.12 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Fungal zinc peptidase |Fungal zinc peptidase |Aspergillus oryzae, deuterolysin [TaxId: 5062]
d3b8za_ : (ALA266) (HIS304) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qc8a2 : (LYS112) (LEU140) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, d.58, i.1, c.79, d.157, d.92, c.42, c.23, f.4, d.144, c.37, c.55, c.95, b.121, c.87, c.60, d.20,
d.110, c.43, d.17, d.38, c.111, d.142, a.4, d.137, d.44, c.58, d.298, d.198, d.31, c.114, d.28, d.225