Tableau information
Concept source: d4b2oa_ amino acid (a.a.) range (ASP61)(VAL82)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP61) (ASN67) E1
(ASN67) (LYS73) H2
(GLU74) (VAL82) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 89.4° H2
H3 -146.1° 114.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1m0wb1 : (ALA1280) (SER1308) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yx1b_ : (ASP155) (ARG178) [view usage] : c.1.15.7 |TIM beta/alpha-barrel |Xylose isomerase-like |KguE-like |Hypothetical protein PA2260 |Pseudomonas aeruginosa [TaxId: 287]
d3ieza_ : (LYS1477) (VAL1506) [view usage] : d.332.1.1 |RGC domain-like |RGC domain-like |RGC domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p60a_ : (ASP173) (ARG219) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxycytidine kinase |Human (Homo sapiens) [TaxId: 9606]
d2vfwa_ : (SER119) (SER143) [view usage] : c.101.1.0 |Undecaprenyl diphosphate synthase |Undecaprenyl diphosphate synthase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2okaa_ : (PHE50) (ASP83) [view usage] : c.47.1.23 |Thioredoxin fold |Thioredoxin-like |Selenoprotein W-related |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1vhvb_ : (LEU2) (GLU25) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Archaeoglobus fulgidus [TaxId: 2234]
d3ehna_ : (ARG502) (GLY524) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d2m4na_ : (ILE52) (ILE71) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1smvc_ : (LYS195) (ASP218) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d1t64a_ : (PRO16) (ALA49) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |Histone deacetylase 8, HDAC8 |Human (Homo sapiens) [TaxId: 9606]
d1b0pa2 : (LYS954) (SER980) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d2ixga_ : (ARG639) (TYR663) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ufoa_ : (PRO174) (LEU198) [view usage] : c.69.1.27 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hypothetical protein TT1662 |Hypothetical protein TT1662 |Thermus thermophilus [TaxId: 274]
d1smva_ : (LYS195) (ASP218) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d2hhpa2 : (ILE151) (GLU199) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1r6za2 : (ALA76) (VAL96) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d2c3yb2 : (LYS954) (SER980) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d1r6zz2 : (ALA76) (ARG97) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1kyta_ : (ARG3) (GLY35) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d3seya_ : (ALA78) (VAL98) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d2ixfa_ : (ARG639) (LEU662) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fk8a_ : (SER178) (PRO210) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Methoxy mycolic acid synthase 4, Mma4 |Mycobacterium tuberculosis [TaxId: 1773]
d1vhva_ : (SER0) (GLU25) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Archaeoglobus fulgidus [TaxId: 2234]
d1krha3 : (ASN57) (GLY78) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Benzoate dioxygenase reductase, N-terminal domain |Acinetobacter sp. [TaxId: 472]
d3j38b_ : (GLY64) (ARG85) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4exza_ : (THR7) (LEU36) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4b2oa_ : (ASP61) (VAL82) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4txea_ : (ILE282) (SER312) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m0ta1 : (ALA280) (SER308) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jvxa_ : (ALA77) (ARG98) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1fbqb_ : (ILE223) (GLY256) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1l6ra_ : (ARG3) (GLY35) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d3szya_ : (VAL385) (ALA416) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1fa0a4 : (ILE151) (VAL201) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1uhwa_ : (HIS36) (GLY70) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Mouse (Mus musculus) [TaxId: 10090]
d3t02a_ : (VAL385) (ALA416) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3fcya_ : (ASP263) (ILE287) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Thermoanaerobacterium sp. [TaxId: 60708]
d2nvoa1 : (ARG361) (GLU400) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1cqib2 : (PRO42) (TRP76) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d2ixfc_ : (ARG639) (SER665) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3iezb_ : (LYS1477) (VAL1506) [view usage] : d.332.1.1 |RGC domain-like |RGC domain-like |RGC domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ft9a1 : (THR5) (ILE34) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Axolotl (Ambystoma mexicanum) [TaxId: 8296]
d2no0a_ : (ASP173) (ARG219) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxycytidine kinase |Human (Homo sapiens) [TaxId: 9606]
d3seva_ : (ALA78) (ARG99) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1dm9b_ : (ALA6) (GLY34) [view usage] : d.66.1.3 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Heat shock protein 15 kD |Heat shock protein 15 kD |Escherichia coli [TaxId: 562]
d1fdqa_ : (THR7) (THR36) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Brain fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1ly1a_ : (GLY104) (GLY148) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Polynucleotide kinase, kinase domain |Bacteriophage T4 [TaxId: 10665]
d3u5cb_ : (ARG64) (ARG82) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4ne7a_ : (SER123) (GLY155) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
d1x36a_ : (LYS203) (PRO226) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |automated matches |SMV (Sesbania mosaic virus) [TaxId: 12558]
d3lc8a_ : (ALA77) (VAL97) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, d.159, c.76, i.1, a.118, c.108, c.90, c.66, c.42, c.37, c.36, c.47, b.60, b.121, c.62, c.41, c.101, d.142,
a.4, c.30, d.15, d.218, d.332, d.66