Tableau information
Concept source: d2cyec_ amino acid (a.a.) range (PRO5)(GLU49)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO5) (ASP11) E1
(ASN24) (SER44) H2
(SER44) (GLU49) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 136.6° H2
H3 -38.1° -148.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3u5cq_ : (ASP64) (ASP113) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3m5ba_ : (GLY80) (ARG113) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4nfxh_ : (ASP102) (SER132) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d1uwkb_ : (PHE361) (GLU399) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d1q27a_ : (SER135) (GLU169) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans [TaxId: 1299]
d4dhib_ : (GLY77) (THR119) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4ig9e_ : (ASP475) (CYS501) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qgda2 : (ASP58) (PHE90) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Escherichia coli [TaxId: 562]
d4dhja_ : (GLY77) (GLU124) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4dhji_ : (GLY77) (GLY126) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2gs5a1 : (ALA158) (TYR188) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d1v8ma_ : (ALA130) (ALA165) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Thermus thermophilus [TaxId: 274]
d1fjgb_ : (TYR199) (GLU243) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Thermus thermophilus [TaxId: 274]
d4ig9g_ : (ASP475) (CYS501) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j7qa1 : (TYR193) (MSE231) [view usage] : d.3.1.20 |Cysteine proteinases |Cysteine proteinases |M48USP-like |Tegument protein M48; N-terminal domain |Murine cytomegalovirus (MCMV) [TaxId: 10366]
d3shda_ : (CYS103) (GLY133) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d3o61d_ : (ASP152) (ASP191) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d4dhjl_ : (GLY77) (GLY126) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3j6vi_ : (ASP327) (GLY368) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d2b0ta_ : (SER642) (GLY690) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1vhza_ : (PRO146) (GLY184) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d3izbi_ : (VAL75) (LEU117) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vhzb_ : (PRO146) (GLY184) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d1maaa_ : (ARG424) (ASN464) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Mouse (Mus musculus) [TaxId: 10090]
d3j38q_ : (GLY67) (ASP118) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3ejjb_ : (SER30) (LEU87) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ig9a_ : (ASP475) (CYS501) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4i5ia_ : (ASP475) (CYS501) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n7ua_ : (LEU389) (ASP425) [view usage] : b.126.1.1 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Adsorption protein p2 |Bacteriophage PRD1 [TaxId: 10658]
d4ovrb_ : (ASP85) (LEU106) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d1z7nf1 : (MET1) (LEU32) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Lactococcus lactis [TaxId: 1358]
d1noya_ : (ALA56) (GLY96) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Bacteriophage T4 [TaxId: 10665]
d2c3yb2 : (GLY861) (GLY916) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d1qffa_ : (ASN310) (ALA331) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1s48a_ : (THR528) (SER568) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d2w99b_ : (GLY253) (GLN291) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i80a1 : (ASP89) (MET128) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3o69b_ : (ASP152) (SER187) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d4ilqa_ : (CYS113) (PHE148) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Chlamydia trachomatis [TaxId: 471472]
d1ga3a_ : (GLY31) (CYS71) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-13 (IL-13) |Human (Homo sapiens) [TaxId: 9606]
d1pc3a_ : (ALA156) (GLY189) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
d3m8ua_ : (THR426) (LEU472) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Haemophilus parasuis [TaxId: 557723]
d3mjfa3 : (VAL384) (GLY427) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1bwqa_ : (GLY137) (ALA169) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d2rrka_ : (GLN104) (ARG137) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3rg8g_ : (GLY108) (LYS158) [view usage] : c.23.8.0 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |automated matches |Treponema denticola [TaxId: 158]
d1x51a1 : (GLY121) (GLY148) [view usage] : d.113.1.3 |Nudix |Nudix |MutY C-terminal domain-like |A/G-specific adenine DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d1vs5i1 : (LEU60) (GLY101) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Ribosomal protein S9 |Escherichia coli [TaxId: 562]
d3mg1a2 : (ARG185) (LEU216) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1mqwa_ : (ASP144) (GLY182) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Mycobacterium tuberculosis [TaxId: 1773]
d4mpof_ : (CYS113) (SER145) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Chlamydia trachomatis [TaxId: 471472]
d3rg8b_ : (GLY108) (LYS156) [view usage] : c.23.8.0 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |automated matches |Treponema denticola [TaxId: 158]
d3mg1b2 : (ARG185) (LEU216) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1vhga_ : (PRO146) (GLY182) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d1uwlb_ : (PHE361) (GLU399) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d2ct5a1 : (ALA37) (PHE63) [view usage] : g.37.1.6 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |BED zinc finger |Zinc finger BED domain-containing protein 1 |Human (Homo sapiens) [TaxId: 9606]
d3vmfa1 : (LYS4) (GLY49) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1tjea2 : (ASP133) (ASN163) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, c.94, i.1, c.77, c.23, f.4, d.144, c.37, c.36, c.55, d.14, d.3, c.31, d.17, d.38, b.84, d.67, e.51, c.30,
d.42, d.113, a.26, b.126, d.310, g.37