Tableau information
Concept source: d4jgga_ amino acid (a.a.) range (GLN1)(ASP32)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN1) (GLY7) E1
(ASP8) (ALA13) H2
(GLY21) (ASP32) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -121.5° H2
H3 162.5° -55.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1k8kd1 : (ASN92) (CYS120) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC2 (34 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d3l6qb2 : (HIS349) (ASN372) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cryptosporidium parvum [TaxId: 353152]
d3bn3a_ : (ILE255) (ALA278) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d1g7va_ : (ALA234) (PHE277) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) |Escherichia coli [TaxId: 562]
d2zcid1 : (LYS212) (GLU243) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d3fe1c2 : (HIS334) (ASN357) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jkoa_ : (GLU7) (ALA47) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1t0tv_ : (ASN139) (ARG176) [view usage] : d.58.4.10 |Ferredoxin-like |Dimeric alpha+beta barrel |Chlorite dismutase-like |YwfI homologue |Bacillus stearothermophilus [TaxId: 1422]
d2i3ea_ : (LEU64) (SER93) [view usage] : d.61.1.0 |LigT-like |LigT-like |automated matches |automated matches |Carassius auratus [TaxId: 7957]
d1hjoa2 : (HIS332) (PHE354) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Human (Homo sapiens) [TaxId: 9606]
d1t0pa_ : (ILE255) (ALA278) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d4nmka_ : (VAL148) (ILE165) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
d3ot1a_ : (ARG125) (PRO137) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d4lija_ : (SER98) (GLY116) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cnua_ : (GLN112) (LYS134) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Cofilin (actin depolymerizing factor, ADF) |Acanthamoeba castellanii, actophorin [TaxId: 5755]
d2d5ua1 : (ARG57) (GLY84) [view usage] : d.314.1.1 |PUG domain-like |PUG domain-like |PUG domain |N-glycanase 1, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3gdqa2 : (HIS334) (ASN357) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i12d1 : (ASP100) (ASN124) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d2g6ta1 : (LYS3) (LYS26) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d3kked_ : (THR63) (SER91) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4jj4a_ : (GLU7) (ALA47) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d4bp0b_ : (LYS210) (PHE247) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4lijc_ : (SER98) (GLY116) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bex1_ : (LYS132) (GLY154) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x6ta_ : (PHE168) (GLY195) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]
d2freb_ : (SER86) (GLY129) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |NAD(P)H-flavin oxidoreductase Atu0013 |Agrobacterium tumefaciens [TaxId: 358]
d2i67b_ : (LYS121) (VAL138) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d3u0oa2 : (GLY304) (GLY325) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2x0sa1 : (ASP874) (LYS903) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3v4za1 : (ASP56) (GLN80) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1czla_ : (GLY140) (GLY168) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d4bgea_ : (ASP89) (LEU134) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
d1czha_ : (GLY140) (GLY168) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d4lijb_ : (SER98) (GLY116) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g6tb_ : (LYS3) (LYS26) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d4nmja_ : (VAL148) (ILE165) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
d3l49a_ : (PRO188) (LYS211) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d2b3wa1 : (LYS122) (LYS160) [view usage] : d.336.1.1 |YbiA-like |YbiA-like |YbiA-like |Hypothetical protein YbiA |Escherichia coli [TaxId: 562]
d4nr0c_ : (LEU35) (GLY56) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2dt5a2 : (GLY82) (GLY102) [view usage] : c.2.1.12 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Transcriptional repressor Rex, C-terminal domain |Transcriptional repressor Rex, C-terminal domain |Thermus aquaticus [TaxId: 271]
d4jj6a_ : (GLU7) (ALA47) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d3b4ub_ : (LEU188) (GLY205) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1gtza_ : (ASP127) (ALA147) [view usage] : c.23.13.1 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Streptomyces coelicolor [TaxId: 1902]
d2x6tg_ : (PHE168) (GLY195) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]
d1fuea_ : (GLY136) (VAL159) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, c.82, d.157, c.93, c.23, c.55, c.62, c.109, d.90, d.109, d.139, c.30, d.51, d.198, c.147, d.314, d.61, d.336