Tableau information
Concept source: d3exfc_ amino acid (a.a.) range (VAL23)(ILE79)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL23) (ARG29) E1
(ARG29) (LYS56) H2
(GLN68) (ILE79) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -85.6° H2
H3 85.0° 135.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4tgla_ : (GLY5) (ALA36) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d3k5la1 : (GLY271) (GLY302) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d2fiaa1 : (MET1) (LYS49) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase EF1919 |Enterococcus faecalis [TaxId: 1351]
d1miqb_ : (HIS78) (SER114) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d3bsda_ : (LEU149) (ILE186) [view usage] : b.75.1.1 |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d2vkua_ : (GLY132) (GLN160) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1on0a_ : (THR2) (ALA39) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase YycN |Bacillus subtilis [TaxId: 1423]
d1q0ha3 : (SER180) (MSE201) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d2b3va_ : (PHE4) (THR37) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Diamine acetyltransferase 1 |Human (Homo sapiens) [TaxId: 9606]
d3awma_ : (SER204) (GLN258) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d3mm5b3 : (ARG197) (ALA219) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |DsrB insert domain |Archaeoglobus fulgidus [TaxId: 2234]
d3awpa_ : (SER204) (GLN258) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d1oywa1 : (PRO407) (GLY441) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |DNA helicase RecQ DNA-binding domain |Escherichia coli [TaxId: 562]
d1cjwa_ : (ALA34) (LEU76) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d1vsaj1 : (TYR80) (GLY104) [view usage] : c.12.1.1 |Ribosomal proteins L15p and L18e |Ribosomal proteins L15p and L18e |Ribosomal proteins L15p and L18e |Ribosomal protein L15 (L15p) |Thermus thermophilus [TaxId: 274]
d2pbpa_ : (PHE62) (ASN83) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1esgb_ : (CYS54) (LYS84) [view usage] : c.52.1.3 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BamHI |Restriction endonuclease BamHI |Bacillus amyloliquefaciens [TaxId: 1390]
d2beka_ : (PHE80) (ALA97) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d4bpva_ : (ASP125) (ASP177) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1mjea5 : (ALA3066) (GLY3105) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |OB-fold domains of BRCA2 |Mouse (Mus musculus) [TaxId: 10090]
d4a05a_ : (GLY372) (ASN399) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1fzcb1 : (GLY372) (GLY430) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1dmle1 : (THR95) (PRO118) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL42 |Human herpesvirus type 1 [TaxId: 10298]
d3froa_ : (THR213) (GLY245) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d2yowa_ : (HIS28) (TYR57) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Bacillus amyloliquefaciens [TaxId: 1390]
d2b5ea1 : (THR452) (ALA502) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Protein disulfide isomerase, PDI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4fo8c_ : (VAL3) (LYS54) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3irua_ : (GLU13) (GLY43) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d1kful1 : (LEU655) (LEU700) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain large subunit, C-terminal domain (domain IV) |Human (Homo sapiens), M-type [TaxId: 9606]
d1on0b_ : (THR2) (ALA39) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase YycN |Bacillus subtilis [TaxId: 1423]
d1ro5a_ : (HIS399) (SER50) [view usage] : d.108.1.3 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Autoinducer synthetase |Autoinducer synthesis protein LasI |Pseudomonas aeruginosa [TaxId: 287]
d1siwb_ : (PHE456) (GLY475) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d1u5wb_ : (ALA105) (TYR130) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d1vpnb_ : (THR183) (VAL207) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |Polyomavirus coat proteins |Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]
d1ffla_ : (LYS48) (GLU74) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1miqa_ : (HIS78) (LYS113) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d1l0ca_ : (ALA34) (LEU76) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d2gidb1 : (ASP141) (ALA173) [view usage] : d.18.1.4 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Guide RNA binding protein gBP |GBP21 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1b6ba_ : (ALA34) (CYS77) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d1bq1a_ : (LYS48) (ASN76) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d4r9va_ : (SER222) (GLY263) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium damselae [TaxId: 38293]
d1lu9a1 : (LYS244) (MET287) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylene-tetrahydromethanopterin dehydrogenase |Methylobacterium extorquens [TaxId: 408]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, a.104, c.2, c.6, d.58, c.108, d.117, c.14, b.50, b.40, c.37, c.36, c.47, c.55, d.171, b.121, d.3, c.87, d.81, d.127,
b.1, d.108, c.51, d.131, c.52, a.4, a.39, d.18, b.75, c.12