Tableau information
Concept source: d1h7ba_ amino acid (a.a.) range (GLY125)(GLN155)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY125) (PHE129) E1
(ASN131) (SER137) H2
(SER137) (GLN155) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -53.0° H2
H3 -42.0° -42.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4f66a_ : (GLY388) (GLY414) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3oicd_ : (ASN150) (GLN176) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3f1ra_ : (HIS189) (LEU208) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c9xa_ : (SER118) (LEU146) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d2zh7a2 : (PRO113) (LYS142) [view usage] : d.218.1.0 |Nucleotidyltransferase |Nucleotidyltransferase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1a0ea_ : (LEU41) (THR72) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Thermotoga neapolitana [TaxId: 2337]
d2xqza_ : (LYS271) (PHE290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d3if6b_ : (LYS66) (ASP86) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3nvsa_ : (GLY236) (ILE256) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |automated matches |Vibrio cholerae [TaxId: 666]
d1h7aa_ : (GLY125) (LYS153) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1qrta2 : (ASP319) (ASN338) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d3pn8b_ : (GLY388) (GLY414) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d1k0sa_ : (ILE133) (VAL151) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Chemotaxis protein CheW |Thermotoga maritima [TaxId: 2336]
d1a34a_ : (ILE51) (ARG66) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d1u9ya1 : (ILE135) (LEU154) [view usage] : c.61.1.2 |PRTase-like |PRTase-like |Phosphoribosylpyrophosphate synthetase-like |Phosphoribosylpyrophosphate synthetase |Methanocaldococcus jannaschii [TaxId: 2190]
d4kt0f_ : (ASN6) (PHE23) [view usage] : f.23.16.1 |Single transmembrane helix |Subunit III of photosystem I reaction centre, PsaF |Subunit III of photosystem I reaction centre, PsaF |automated matches |Synechocystis sp. [TaxId: 1148]
d1uima_ : (PRO149) (GLY176) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d1a0ca_ : (ARG42) (THR72) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
d1zkcb_ : (LYS423) (PRO457) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain |Human (Homo sapiens) [TaxId: 9606]
d1h7ba_ : (GLY125) (GLN155) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1f3la_ : (ASP358) (ASP382) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Arginine methyltransferase, HMT1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1pwha_ : (GLY129) (THR155) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2bg1a1 : (ASP453) (ALA467) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1wdwb_ : (TYR178) (ALA214) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Pyrococcus furiosus [TaxId: 2261]
d1b0pa1 : (LYS182) (ALA205) [view usage] : c.36.1.8 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR Pyr module |Pyruvate-ferredoxin oxidoreductase, PFOR, domain I |Desulfovibrio africanus [TaxId: 873]
d1q7ha2 : (SER3) (GLY23) [view usage] : d.17.6.2 |Cystatin-like |Pre-PUA domain |Hypothetical protein Ta1423, N-terminal domain |Hypothetical protein Ta1423, N-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d1zkca1 : (LYS423) (PRO457) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain |Human (Homo sapiens) [TaxId: 9606]
d1a0da_ : (ARG41) (TYR70) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Bacillus stearothermophilus [TaxId: 1422]
d1dq3a2 : (PRO341) (GLY355) [view usage] : d.50.3.1 |dsRBD-like |YcfA/nrd intein domain |PI-Pfui intein middle domain |PI-Pfui intein middle domain |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, d.68, c.2, c.79, c.26, c.66, b.50, b.40, c.36, c.7, b.121, b.42, d.17, b.62, c.61, d.218, d.50, f.23