Tableau information
Concept source: d1sb7a_ amino acid (a.a.) range (GLU42)(SER74)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU42) (GLY52) E1
(THR55) (PHE65) H2
(HIS69) (SER74) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 130.3° H2
H3 -86.1° 120.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3f81a_ : (ASN117) (ARG158) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dmra2 : (ASP80) (PHE110) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Dimethylsulfoxide reductase (DMSO reductase) |Rhodobacter capsulatus [TaxId: 1061]
d4dnod_ : (GLN93) (ARG121) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d1xnea_ : (GLU53) (PHE73) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |Hypothetical protein PF0470 |Pyrococcus furiosus [TaxId: 2261]
d1fq1a_ : (LYS135) (ARG175) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Kinase associated phosphatase (kap) |Human (Homo sapiens) [TaxId: 9606]
d2phcb1 : (ILE86) (ASN107) [view usage] : b.62.1.4 |Cyclophilin-like |Cyclophilin-like |PH0987 C-terminal domain-like |Uncharacterized protein PH0987 |Pyrococcus horikoshii [TaxId: 53953]
d1dota1 : (MET306) (ASP334) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Duck (Anas platyrhynchos) [TaxId: 8839]
d1k2ea_ : (ASN107) (GLU150) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein PAE3301 |Pyrobaculum aerophilum [TaxId: 13773]
d1f1xa2 : (VAL215) (GLU242) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Homoprotocatechuate 2,3-dioxygenase |Brevibacterium fuscum [TaxId: 47914]
d3i2bg_ : (LYS54) (VAL97) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r87a_ : (LYS3) (GLY52) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Photobacterium profundum [TaxId: 74109]
d1b2va_ : (ALA2) (PHE27) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d1dkha_ : (PHE3) (PHE27) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d2bh1a2 : (THR65) (HIS97) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |automated matches |Vibrio cholerae [TaxId: 666]
d2zxja_ : (GLY174) (ASP194) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1oqha_ : (GLY301) (GLU328) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d1ig0a2 : (ASP63) (TYR89) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xp3a1 : (PRO256) (ALA297) [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |Endonuclease IV |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1d8ta3 : (LYS9) (ASN51) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d1acoa1 : (ILE725) (LEU751) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2lq7a_ : (GLN351) (SER378) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1bp5a_ : (GLY301) (ARG327) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d2gria1 : (SER41) (MET76) [view usage] : d.15.14.1 |beta-Grasp (ubiquitin-like) |NSP3A-like |NSP3A-like |Nsp3 |SARS coronavirus [TaxId: 227859]
d2uydx_ : (ALA2) (GLY28) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |Serratia marcescens [TaxId: 615]
d2chla_ : (ASN157) (ILE181) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jqfa_ : (GLY301) (GLU328) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d1wytb1 : (ASP123) (ARG157) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d4wt7b_ : (GLU207) (LYS237) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
d1gw9a_ : (TYR254) (GLY279) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d3glsa_ : (ARG358) (LEU394) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3glsb_ : (ARG358) (LEU394) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d3ka_ : (GLY301) (GLU328) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d2dp9a_ : (VAL53) (TYR81) [view usage] : b.122.1.5 |PUA domain-like |PUA domain-like |Hypothetical protein TTHA0113 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1efca3 : (ASN13) (ASN51) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d2mmca_ : (GLN8) (GLU36) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Human (Homo sapiens) [TaxId: 9606]
d1s04a_ : (ALA53) (PHE89) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |Hypothetical protein PF0455 |Pyrococcus furiosus [TaxId: 2261]
d2e29a1 : (GLY19) (GLN52) [view usage] : d.58.7.5 |Ferredoxin-like |RNA-binding domain, RBD |GUCT domain |ATP-dependent RNA helicase DDX50 |Human (Homo sapiens) [TaxId: 9606]
d1rlcl2 : (ILE36) (LYS81) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d2glka_ : (TYR254) (GLY279) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |automated matches |Streptomyces rubiginosus [TaxId: 1929]
d1d8tb3 : (LYS9) (ASN51) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d1xq9b_ : (LYS186) (GLU213) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1hrub_ : (LEU258) (GLY291) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein YrdC |Escherichia coli [TaxId: 562]
d1i3ja_ : (VAL210) (SER235) [view usage] : d.285.1.1 |DNA-binding domain of intron-encoded endonucleases |DNA-binding domain of intron-encoded endonucleases |DNA-binding domain of intron-encoded endonucleases |DNA-binding domain of intron endonuclease I-TevI |Bacteriophage T4 [TaxId: 10665]
d1dxia_ : (TYR254) (ALA278) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces murinus [TaxId: 33900]
d1jw1a1 : (GLY306) (GLU333) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Goat (Capra hircus) [TaxId: 9925]
d2jcsa_ : (THR22) (CYS48) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4fdma_ : (SER301) (ASN326) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus sp. [TaxId: 307644]
d1e60a2 : (ASP80) (PHE110) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Dimethylsulfoxide reductase (DMSO reductase) |Rhodobacter capsulatus [TaxId: 1061]
d1fi4a1 : (HIS105) (GLY152) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate 5-diphosphate decarboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jr2a_ : (GLY58) (ARG85) [view usage] : c.113.1.1 |HemD-like |HemD-like |HemD-like |Uroporphyrinogen III synthase (U3S, HemD) |Human (Homo sapiens) [TaxId: 9606]
d1wyub_ : (ASP123) (ARG157) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d1w55a2 : (PHE208) (TYR270) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |IspD/ispF bifunctional enzyme, MECDP synthase domain |Campylobacter jejuni [TaxId: 197]
d2d3ia1 : (MET306) (LYS333) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1tuia3 : (LYS9) (ALA53) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
d1ieja_ : (MET306) (ARG332) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d1lcfa1 : (GLY306) (ASN330) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d2fyia1 : (ALA267) (MET305) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d2ownb2 : (THR160) (HIS199) [view usage] : d.38.1.8 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-ACP thioesterase-like |Putative oleoyl-ACP thioesterase LP0708 |Lactobacillus plantarum [TaxId: 1590]
d2fyic_ : (ALA267) (MET305) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d2egie_ : (PRO2) (GLY51) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3a12a1 : (ILE25) (SER71) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Thermococcus kodakaraensis [TaxId: 311400]
d3zgoc_ : (ARG316) (SER356) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4k29b_ : (ASN180) (GLY222) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d3c5fa3 : (GLY483) (LYS523) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2z0ta_ : (LYS52) (PRO74) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |automated matches |Pyrococcus horikoshii [TaxId: 53953]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.81, c.94, d.58, c.93, c.14, c.45, c.113, d.144, c.37, c.55, d.14, c.60, c.31, d.96, d.32, b.122, c.8,
d.38, b.62, c.111, d.79, a.4, d.15, d.218, d.113, c.100, d.265, d.35, d.115, d.285