Tableau information
Concept source: d2r3bb_ amino acid (a.a.) range (LYS147)(LEU180)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS147) (HIS153) E1
(GLN154) (LEU160) H2
(THR169) (LEU180) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 124.2° H2
H3 141.2° 55.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vmea2 : (GLY170) (ILE202) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |ROO-like flavoprotein TM0755, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1lbeb_ : (VAL74) (TYR94) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d1c8xa_ : (THR10) (LYS27) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
d3qhyb_ : (GLY200) (GLY221) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1tw8a_ : (LYS19) (ASN48) [view usage] : c.52.1.19 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease HincII |Restriction endonuclease HincII |Haemophilus influenzae [TaxId: 727]
d1mwwa_ : (MET1) (ASP31) [view usage] : d.80.1.4 |Tautomerase/MIF |Tautomerase/MIF |Hypothetical protein HI1388.1 |Hypothetical protein HI1388.1 |Haemophilus influenzae [TaxId: 727]
d2l80a_ : (ALA81) (HIS112) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jhha2 : (GLY75) (ILE94) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |LexA C-terminal domain |Escherichia coli [TaxId: 562]
d4dikb1 : (GLY170) (ILE202) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |automated matches |Thermotoga maritima [TaxId: 2336]
d2og1b_ : (GLU34) (ALA62) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d2is8a_ : (ARG122) (GLY155) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4lhbb_ : (GLU134) (GLU169) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1vpla_ : (VAL213) (LYS239) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Putative ABC transporter TM0544 |Thermotoga maritima [TaxId: 2336]
d4qgrb_ : (GLU50) (GLY70) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Brucella abortus [TaxId: 359391]
d1jhfa2 : (GLY75) (ILE94) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |LexA C-terminal domain |Escherichia coli [TaxId: 562]
d1gm5a2 : (ARG253) (LEU284) [view usage] : b.40.4.9 |OB-fold |Nucleic acid-binding proteins |RecG "wedge" domain |RecG "wedge" domain |Thermotoga maritima [TaxId: 2336]
d3j39m_ : (LYS59) (SER89) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1lbea_ : (VAL74) (TYR94) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d4flsa1 : (LYS97) (ILE119) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d1rvv1_ : (VAL109) (GLU154) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Bacillus subtilis [TaxId: 1423]
d4dila1 : (VAL169) (ILE202) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |automated matches |Thermotoga maritima [TaxId: 2336]
d3og2a1 : (GLY301) (ALA334) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1wf2a_ : (SER16) (GLY41) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Heterogeneous nuclear ribonucleoproteins C1/C2 |Human (Homo sapiens) [TaxId: 9606]
d1be3a2 : (ALA421) (TRP443) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 1 |Cow (Bos taurus) [TaxId: 9913]
d3p0wa2 : (PRO162) (GLU196) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Ralstonia pickettii [TaxId: 402626]
d1p4ka_ : (PRO5) (GLY28) [view usage] : d.153.1.5 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |(Glycosyl)asparaginase |Glycosylasparaginase (aspartylglucosaminidase, AGA) |Flavobacterium meningosepticum [TaxId: 238]
d1p4ka_ : (GLY198) (GLY225) [view usage] : d.153.1.5 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |(Glycosyl)asparaginase |Glycosylasparaginase (aspartylglucosaminidase, AGA) |Flavobacterium meningosepticum [TaxId: 238]
d1oroa_ : (LEU66) (ASP90) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Orotate PRTase |Escherichia coli [TaxId: 562]
d2w9pa_ : (GLY4) (LYS30) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d2psoa1 : (ARG1065) (GLN1102) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d1pd5f_ : (LYS182) (GLU214) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1flcb_ : (GLY136) (PHE154) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza C virus [TaxId: 11552]
d1i5ea_ : (LYS71) (LYS90) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Bacillus caldolyticus [TaxId: 1394]
d2wu9a1 : (ASP51) (ASN91) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2fnca_ : (GLY256) (ARG290) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1ugqa_ : (ARG167) (GLY197) [view usage] : d.149.1.1 |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Cobalt-containing nitrile hydratase |Pseudonocardia thermophila [TaxId: 1848]
d2kewa_ : (GLY97) (GLU143) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |automated matches |Bacillus subtilis [TaxId: 224308]
d3v1la_ : (GLU34) (ALA62) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d4a19f_ : (LYS57) (THR88) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4loib_ : (ASN308) (GLU336) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d2y2cc_ : (ASN149) (VAL178) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d1aa9a_ : (MET1) (ILE24) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |cH-p21 Ras protein |Human (Homo sapiens) [TaxId: 9606]
d1iuna_ : (GLN26) (TYR55) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
d1r12a_ : (VAL74) (TYR94) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d3zwmd_ : (VAL74) (TYR94) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d4dika1 : (GLY170) (ILE202) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |automated matches |Thermotoga maritima [TaxId: 2336]
d1x4da1 : (ARG16) (GLY41) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Matrin 3 |Mouse (Mus musculus) [TaxId: 10090]
d1y37a_ : (PRO234) (TRP255) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia sp. [TaxId: 384033]
d3lc8b_ : (SER263) (LEU285) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
d1xyxa_ : (ASN159) (GLY195) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d2no0a_ : (PRO232) (LEU260) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxycytidine kinase |Human (Homo sapiens) [TaxId: 9606]
d2wu9b1 : (ASP51) (ASN91) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1e3pa4 : (TYR400) (LEU439) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d1pd5h_ : (LYS182) (GLU214) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d2pu7a_ : (GLU34) (GLY63) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d3zwmc_ : (VAL74) (TYR94) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1s8ea_ : (ASP137) (LEU161) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3c5fa3 : (ASP427) (GLY455) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, d.159, d.58, b.69, i.1, d.157, d.129, c.72, c.23, b.40, c.37, d.185, c.95, d.153, d.14, c.57, c.43,
d.17, c.61, c.16, d.118, c.52, h.3, b.87, d.218, d.6, d.80, d.149, g.44, d.387