Tableau information
Concept source: d1opca_ amino acid (a.a.) range (GLU157)(LEU188)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU157) (THR162) E1
(THR162) (PRO176) H2
(SER181) (LEU188) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -105.8° H2
H3 -99.3° 113.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3elgb_ : (GLY21) (SER44) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2443 |Bacteroides vulgatus [TaxId: 821]
d3i54d1 : (ARG100) (THR144) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3iaoa1 : (LYS2) (ASP29) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |automated matches |Bacillus subtilis [TaxId: 1423]
d2mnga_ : (CYS679) (VAL706) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2o2ab_ : (GLY78) (ASP116) [view usage] : d.33.1.2 |SecB-like |SecB-like |SP1558-like |Hypothetical protein gbs1413 |Streptococcus agalactiae [TaxId: 1311]
d1w9aa_ : (GLY84) (ARG128) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d2hi2a_ : (GLY55) (LYS74) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Neisseria gonorrhoeae [TaxId: 485]
d1iq8a4 : (ALA367) (ARG394) [view usage] : d.17.6.1 |Cystatin-like |Pre-PUA domain |Archaeosine tRNA-guanine transglycosylase, C2 domain |Archaeosine tRNA-guanine transglycosylase, C2 domain |Pyrococcus horikoshii [TaxId: 53953]
d4u0xa_ : (GLU146) (ILE178) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d4jysa_ : (VAL184) (ILE207) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d1qwma_ : (GLY323) (GLN353) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Helicobacter pylori [TaxId: 210]
d3bw8a_ : (ASP4) (ARG41) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium limosum [TaxId: 1536]
d1w7wb_ : (ILE116) (VAL139) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Pea (Pisum sativum) [TaxId: 3888]
d1ygha_ : (ARG103) (GLN127) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Catalytic domain of GCN5 histone acetyltransferase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1eala_ : (GLY4) (ALA31) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Ileal lipid-binding protein |Pig (Sus scrofa) [TaxId: 9823]
d1k1ga_ : (ASN172) (PRO202) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |RNA splicing factor 1 |Human (Homo sapiens) [TaxId: 9606]
d1iylb1 : (ASP82) (PRO130) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
d4rsha_ : (LYS55) (SER74) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
d1qs0a_ : (SER53) (LYS101) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |2-oxoisovalerate dehydrogenase (E1B), PP module |Pseudomonas putida [TaxId: 303]
d1drma_ : (ASP154) (GLN186) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d3brda1 : (LEU609) (THR629) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2lbda_ : (GLY208) (TYR279) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d3zkwb_ : (LYS52) (PRO92) [view usage] : c.92.2.4 |Chelatase-like |"Helical backbone" metal receptor |TM0189-like |Enterochelin uptake protein CeuE |Campylobacter jejuni [TaxId: 197]
d1ml4a1 : (GLY5) (GLY37) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Pyrococcus abyssi [TaxId: 29292]
d1od2a2 : (THR1992) (MSE2012) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tika_ : (ASP90) (PHE121) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |ACP phosphodiesterase AcpD |Escherichia coli [TaxId: 562]
d3kt3c_ : (ASN179) (GLY214) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qs2a1 : (LYS62) (ASN100) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
d2d5ia_ : (ASP87) (PHE118) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |ACP phosphodiesterase AcpD |Escherichia coli [TaxId: 562]
d1pi4a_ : (THR146) (LYS183) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d1r89a3 : (TYR411) (GLY434) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1t64a_ : (ARG55) (GLN84) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |Histone deacetylase 8, HDAC8 |Human (Homo sapiens) [TaxId: 9606]
d3ovuc_ : (HIS45) (LEU86) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
d1tugc1 : (GLN6) (ALA32) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d1xxoa_ : (GLY84) (ARG128) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d1q2ya_ : (MET1) (ASP36) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase YjcF |Bacillus subtilis [TaxId: 1423]
d3lbda_ : (GLY208) (TYR279) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d1n2db_ : (GLY99) (LYS127) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4f7wa_ : (ASP1194) (PRO1211) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d3hzra_ : (THR153) (PHE185) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1omoa_ : (MET1) (GLY34) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Archaeal alanine dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d3elga1 : (GLY21) (SER44) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2443 |Bacteroides vulgatus [TaxId: 821]
d2jdca1 : (ILE2) (PHE31) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase YitI |Bacillus licheniformis [TaxId: 1402]
d2cvoa2 : (SER240) (ILE266) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Putative semialdehyde dehydrogenase |Rice (Oryza sativa) [TaxId: 4530]
d1ig0b2 : (ASP63) (TYR89) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2z02a_ : (GLY134) (GLY176) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d4f7wd_ : (ASP1194) (PRO1211) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d4jimb_ : (GLY322) (THR350) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |automated matches |Moorella thermoacetica [TaxId: 1525]
d1ttha2 : (GLN6) (ASN33) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d3ivaa3 : (GLN1131) (GLY1162) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d2xd7a_ : (GLU213) (LYS250) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ynsa_ : (THR11) (ASN38) [view usage] : c.108.1.22 |HAD-like |HAD-like |Enolase-phosphatase E1 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bswa1 : (ILE2) (PHE31) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase YitI |Bacillus licheniformis [TaxId: 1402]
d1u7hb_ : (MET1) (ARG36) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Ornithine cyclodeaminase |Pseudomonas putida [TaxId: 303]
d1l0ea_ : (THR146) (LYS183) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d1iela_ : (THR146) (LYS183) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d1kvla_ : (THR146) (LYS183) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d5gcna_ : (LEU5) (ASP47) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Catalytic domain of GCN5 histone acetyltransferase |Tetrahymena thermophila [TaxId: 5911]
d4mwoa_ : (LEU36) (PRO62) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k7ya3 : (GLN1131) (GLY1162) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d1vlla_ : (GLU2) (GLY34) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Archaeal alanine dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d4muma1 : (LEU36) (PRO62) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2csoa1 : (HIS46) (GLY80) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d2c12a2 : (ALA209) (GLN227) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Nitroalkane oxidase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d3tb4a_ : (PRO71) (TRP93) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d2o9ab_ : (GLY57) (LYS87) [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
d1vkza3 : (GLU273) (GLY304) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 |Thermotoga maritima [TaxId: 2336]
d1bhea_ : (GLY70) (VAL91) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d2b3xa2 : (ALA81) (ASN115) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Iron-responsive element binding protein 1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4cf6a_ : (ASP96) (TYR127) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kxla_ : (PHE80) (GLN108) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |CDC13 ssDNA-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2xd7c_ : (GLU213) (LYS250) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zk3a_ : (LYS52) (LYS91) [view usage] : c.92.2.4 |Chelatase-like |"Helical backbone" metal receptor |TM0189-like |Enterochelin uptake protein CeuE |Campylobacter jejuni [TaxId: 197]
d2yw2a2 : (GLU283) (GLY314) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.5, e.3, b.82, c.2, d.58, c.108, c.26, c.92, c.14, c.42, c.23, b.40, c.37, c.36, e.6, d.166, b.60, d.81, b.1,
b.45, a.123, c.78, d.108, d.110, d.143, d.17, d.98, c.50, c.33, d.142, a.1, a.4, a.39, d.26, c.83, d.33, d.24, c.100, d.51,
a.6, d.173