Tableau information
Concept source: d1bvqa_ amino acid (a.a.) range (ARG3)(GLY55)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG3) (PHE13) E1
(TRP23) (GLY43) H2
(PRO46) (GLY55) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 144.1° H2
H3 -130.7° 63.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2efcb_ : (SER8) (GLU40) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4jrha2 : (VAL259) (GLY299) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2gj8d_ : (LYS218) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d2ecra_ : (PRO43) (GLY63) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1n9na_ : (THR21) (GLN61) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |Putative blue light receptor, phot-lov1 domain |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2gj8a_ : (LYS218) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d2egif_ : (PHE3) (MET50) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1xsna3 : (VAL545) (ASP574) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1afwa2 : (LEU299) (ASP338) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Thiolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2essa2 : (VAL159) (THR195) [view usage] : d.38.1.8 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-ACP thioesterase-like |Acyl-ACP thioesterase |Bacteroides thetaiotaomicron [TaxId: 818]
d2gt4a_ : (PRO49) (GLN81) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d2gj9b_ : (MET217) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d2dt8a_ : (GLY34) (GLY55) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1lo7a_ : (ARG3) (GLU53) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |4-hydroxybenzoyl-CoA thioesterase |Pseudomonas sp., CBS-3 [TaxId: 306]
d1fjge1 : (ILE118) (ARG152) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Ribosomal protein S5, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1p9ka_ : (ALA11) (LYS40) [view usage] : d.66.1.6 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |YbcJ-like |Hypothetical protein YbcJ |Escherichia coli [TaxId: 562]
d3hm0c_ : (ALA14) (SER62) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d1ufqa_ : (PHE21) (ASP50) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Uridine-cytidine kinase 2 |Human (Homo sapiens) [TaxId: 9606]
d1o5ua_ : (VAL3) (PRO22) [view usage] : b.82.1.8 |Double-stranded beta-helix |RmlC-like cupins |Hypothetical protein TM1112 |Hypothetical protein TM1112 |Thermotoga maritima [TaxId: 2336]
d4e1la2 : (LYS277) (ASP312) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d4ls5b2 : (GLY254) (ASP297) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4cs5a1 : (MET1) (ASN24) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d3os4b2 : (GLY254) (ARG277) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2w8pa_ : (ASN418) (THR439) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nrrb1 : (ASP10) (ASN56) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Babesia bovis [TaxId: 5865]
d3kjra1 : (ASP10) (ASN56) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Babesia bovis [TaxId: 484906]
d2dj0a_ : (ALA100) (GLY133) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pdoa_ : (ALA4) (GLY26) [view usage] : c.54.1.1 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |EIIA-man component-like |IIA domain of mannose transporter, IIA-Man |Escherichia coli [TaxId: 562]
d2io0a1 : (THR530) (HIS585) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d2h59a_ : (THR225) (SER246) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |NAD-dependent deacetylase NpdA |Thermotoga maritima [TaxId: 2336]
d2i3wa_ : (LYS4) (MET25) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d1rqda_ : (ALA334) (HIS364) [view usage] : c.31.1.1 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Deoxyhypusine synthase, DHS |Deoxyhypusine synthase, DHS |Human (Homo sapiens) [TaxId: 9606]
d1jw1a1 : (SER252) (SER283) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Goat (Capra hircus) [TaxId: 9925]
d4ls5a2 : (GLY254) (ASP297) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1ryza_ : (GLY154) (SER183) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Salmonella typhimurium [TaxId: 90371]
d1esga_ : (VAL188) (TRP206) [view usage] : c.52.1.3 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BamHI |Restriction endonuclease BamHI |Bacillus amyloliquefaciens [TaxId: 1390]
d1wpwa_ : (ASP214) (GLY235) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Sulfolobus tokodaii [TaxId: 111955]
d2gj8b_ : (LYS218) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d3wh9a_ : (ASN167) (ARG197) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Aspergillus niger [TaxId: 5061]
d2jzna_ : (ALA4) (GLY26) [view usage] : c.54.1.1 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |EIIA-man component-like |IIA domain of mannose transporter, IIA-Man |Escherichia coli [TaxId: 562]
d2gjaa_ : (LYS218) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d2gj9a_ : (LYS218) (VAL254) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d3inna_ : (SER0) (GLY21) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d3hbja_ : (LEU13) (ALA41) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1bvqa_ : (ARG3) (GLY55) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |4-hydroxybenzoyl-CoA thioesterase |Pseudomonas sp., CBS-3 [TaxId: 306]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.94, c.82, c.26, c.56, c.77, c.37, c.47, c.95, d.14, d.3, c.87, c.31, c.71, b.45, d.110, d.38, d.131, c.52,
c.54, d.218, d.113, c.119, d.66