Tableau information
Concept source: d1g6na2 amino acid (a.a.) range (GLU93)(ALA135)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU93) (SER98) E1
(SER98) (ASN109) H2
(ASP111) (ALA135) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 86.1° H2
H3 -110.1° -115.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1g0da1 : (ASP10) (ASP28) [view usage] : b.1.18.9 |Immunoglobulin-like beta-sandwich |E set domains |Transglutaminase N-terminal domain |Transglutaminase N-terminal domain |Red sea bream (Chrysophrys major) [TaxId: 143350]
d1ei5a3 : (GLY227) (SER257) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-aminopeptidase, N-terminal domain |Ochrobactrum anthropi [TaxId: 529]
d1xyga2 : (ARG253) (VAL286) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |N-acetyl-gamma-glutamyl-phosphate reductase ArgC |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3a9wb_ : (ASN202) (GLY233) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d4a2ud1 : (ALA101) (ILE142) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3itab1 : (GLY90) (VAL118) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3clpc_ : (LEU319) (ARG349) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Rhizobium loti [TaxId: 381]
d1rgsa1 : (LEU221) (TYR244) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Cow (Bos taurus) [TaxId: 9913]
d3lnua2 : (VAL362) (ARG422) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Xanthomonas oryzae [TaxId: 291331]
d1c3pa_ : (LYS5) (PRO26) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |HDAC homologue |Aquifex aeolicus [TaxId: 63363]
d3vb9a_ : (MSE131) (LYS153) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d4bqfb_ : (GLN483) (LYS511) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1o5la1 : (SER84) (LYS129) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |CRP-like transcriptional regulator TM1171, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2o3bb_ : (ALA56) (LEU99) [view usage] : d.221.1.1 |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |automated matches |Nostoc sp. PCC 7120 [TaxId: 103690]
d1cwra_ : (LEU398) (ASP419) [view usage] : c.46.1.1 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Cell cycle control phosphatase, catalytic domain |CDC25b |Human (Homo sapiens) [TaxId: 9606]
d1kija1 : (ALA321) (VAL392) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |DNA gyrase B |Thermus thermophilus [TaxId: 274]
d3iwza1 : (GLU109) (LEU158) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1k7la_ : (ASN336) (ILE354) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d2bgca2 : (GLU90) (ASN137) [view usage] : b.82.3.3 |Double-stranded beta-helix |cAMP-binding domain-like |Listeriolysin regulatory protein PrfA, N-terminal domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d2jbza_ : (HIS0) (LEU30) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2z69b_ : (SER106) (GLU144) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Pseudomonas aeruginosa
d1efwa2 : (GLU298) (ALA317) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Prokaryotic AspRS, insert domain |Thermus thermophilus, AspRS-1 [TaxId: 274]
d4e4ka_ : (GLN345) (PHE363) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor gamma, PPAR-gamma |Human (Homo sapiens) [TaxId: 9606]
d1tfga_ : (ARG18) (PRO36) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |TGF-beta2 |Human (Homo sapiens) [TaxId: 9606]
d1wp1a_ : (THR122) (GLY239) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane protein OprM |Pseudomonas aeruginosa [TaxId: 287]
d2cvoa2 : (GLY310) (LYS343) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Putative semialdehyde dehydrogenase |Rice (Oryza sativa) [TaxId: 4530]
d3i54c1 : (ALA101) (THR144) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2xdra_ : (ASN324) (GLY366) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2hbva1 : (SER221) (PRO255) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d4hxza2 : (TYR317) (ALA381) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Francisella tularensis [TaxId: 376619]
d8gpba_ : (GLN480) (ILE507) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1zxfa1 : (VAL6) (GLY41) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Calicheamicin gene cluster protein CalC |Micromonospora echinospora [TaxId: 1877]
d4bex1_ : (GLY4) (ARG32) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eyra_ : (PRO196) (HIS225) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Neisseria meningitidis [TaxId: 487]
d2m8ca_ : (ASP159) (TYR181) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 536056]
d3rpqa1 : (GLU93) (ALA135) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
d2f20a1 : (PHE3) (GLN29) [view usage] : d.303.1.1 |BB1717-like |BB1717-like |BB1717-like |Hypothetical protein BT1218 |Bacteroides thetaiotaomicron [TaxId: 818]
d1ni5a1 : (GLY108) (SER138) [view usage] : c.26.2.5 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PP-loop ATPase |tRNA-Ile-lysidine synthetase, TilS, N-terminal domain |Escherichia coli [TaxId: 562]
d3szya_ : (ALA23) (ARG54) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3d5ka_ : (THR122) (GLY239) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane protein OprM |Pseudomonas aeruginosa [TaxId: 287]
d3t02a_ : (ALA23) (ARG54) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1cgpa2 : (GLU93) (ALA135) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
d4doia_ : (GLU183) (LYS226) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4doib_ : (GLU1183) (ASN1227) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4n9ha1 : (GLU93) (THR127) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
d4bcra_ : (ASN336) (ILE354) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d2p7ja1 : (HIS189) (ASN220) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d3ne1a_ : (GLY5) (SER40) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4dcxb_ : (ASP70) (ILE107) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d3w53a_ : (ARG419) (ARG439) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Micrococcus antarcticus [TaxId: 86171]
d2o1ma_ : (PRO150) (THR175) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1zyba2 : (THR107) (TRP145) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Probable transcription regulator BT4300, N-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3h5va_ : (ALA234) (THR269) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1f2da_ : (VAL318) (PRO337) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d3mzha1 : (GLU98) (ILE142) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1ei1a1 : (ASP338) (THR392) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |DNA gyrase B |Escherichia coli [TaxId: 562]
d1jrka_ : (ASN107) (ALA148) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein PAE3301 |Pyrobaculum aerophilum [TaxId: 13773]
d1khta_ : (ILE118) (ASP141) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus voltae [TaxId: 2188]
d3ppsa3 : (LEU514) (ASN555) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Thielavia arenaria [TaxId: 113610]
d3dkha3 : (LEU513) (ASN550) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d2gwxb_ : (SER345) (ILE363) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator-activated receptor delta, PPAR-DELTA |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, b.82, c.94, c.2, c.76, c.68, c.79, c.82, c.26, c.93, c.42, d.129, c.37, d.14, c.87, d.81, b.6, b.1, a.123,
d.110, d.109, d.150, d.74, c.46, d.113, g.17, d.36, e.65, f.5, d.221, d.303