Tableau information
Concept source: d3f1lb_ amino acid (a.a.) range (ARG62)(PRO91)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG62) (ILE68) E1
(SER76) (ALA87) H2
(ALA87) (PRO91) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 156.8° H2
H3 -151.3° -41.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgea4 : (ALA235) (PHE259) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1pgja2 : (LYS138) (ALA162) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |6-phosphogluconate dehydrogenase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2c4ka1 : (GLY7) (GLY31) [view usage] : c.61.1.2 |PRTase-like |PRTase-like |Phosphoribosylpyrophosphate synthetase-like |PRPP synthetase-associated protein 1 |Human (Homo sapiens) [TaxId: 9606]
d1f60a3 : (CYS111) (GLY144) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor eEF-1alpha, N-terminal (G) domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3fhta2 : (LYS308) (ILE333) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ajta2 : (ALA145) (LEU176) [view usage] : c.85.1.2 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |AraA N-terminal and middle domain-like |L-arabinose isomerase AraA |Escherichia coli [TaxId: 562]
d1ztva_ : (PHE59) (SER99) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |automated matches |Enterococcus faecalis [TaxId: 226185]
d1v03a_ : (MET407) (LEU443) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Sorghum (Sorghum bicolor) [TaxId: 4558]
d1woga_ : (ARG112) (VAL134) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Agmatinase |Deinococcus radiodurans [TaxId: 1299]
d1mqaa_ : (ILE255) (THR300) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d1mdba_ : (SER223) (GLY250) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
d1eh5a_ : (GLN279) (GLU306) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 1 |Cow (Bos taurus) [TaxId: 9913]
d3fhtb2 : (LYS308) (ILE333) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cwwb2 : (GLU211) (PHE231) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d3qzea_ : (PRO129) (VAL154) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1rm6b2 : (SER69) (THR90) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain |Thauera aromatica [TaxId: 59405]
d1m8ga_ : (MET4) (ASP31) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4lh7a_ : (GLU257) (LEU281) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d2e5xa_ : (MET1) (GLY24) [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
d2hr7b3 : (SER339) (ILE361) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wxwb2 : (GLU211) (PHE231) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d1jdwa_ : (PRO341) (GLY387) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d3groa_ : (GLN279) (GLY306) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vlha_ : (MET1) (ASP28) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Phosphopantetheine adenylyltransferase |Thermotoga maritima [TaxId: 2336]
d1mmsa2 : (GLN8) (GLY32) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d3fluc_ : (PRO129) (ILE154) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d3gnoa_ : (MET397) (GLY435) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d1s1ma2 : (ALA234) (SER265) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Escherichia coli [TaxId: 562]
d1a4sa_ : (PRO384) (LYS398) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Baltic cod (Gadus callarias) [TaxId: 8053]
d2zyga1 : (LYS136) (ILE159) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d2xb8a_ : (ILE73) (LEU93) [view usage] : c.23.13.1 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Mycobacterium tuberculosis [TaxId: 1773]
d2jdxa_ : (PRO341) (GLY387) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d2b7ca3 : (CYS111) (GLY144) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor eEF-1alpha, N-terminal (G) domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1pkya3 : (THR395) (SER412) [view usage] : c.49.1.1 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |Pyruvate kinase, C-terminal domain |Pyruvate kinase, C-terminal domain |Escherichia coli [TaxId: 562]
d1yupc_ : (LEU117) (LEU143) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Reindeer (Rangifer tarandus) [TaxId: 9870]
d3tsre_ : (GLN225) (LEU248) [view usage] : c.10.1.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |28-residue LRR |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1h42a2 : (ALA148) (MET169) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Anabaena sp., pcc 7119 [TaxId: 1167]
d1yupe_ : (LEU117) (LEU143) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Reindeer (Rangifer tarandus) [TaxId: 9870]
d2d9za_ : (MET84) (MET123) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ck1a2 : (GLY193) (ASN220) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin C3, SEC3 |Staphylococcus aureus [TaxId: 1280]
d1ezwa_ : (CYS231) (SER256) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanopyrus kandleri [TaxId: 2320]
d1v7mv_ : (ARG117) (VAL145) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Thrombopoietin |Human (Homo sapiens) [TaxId: 9606]
d1pioa_ : (SER256) (PHE290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d1md9a_ : (SER223) (GLY250) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
d3w53a_ : (ILE220) (GLY261) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Micrococcus antarcticus [TaxId: 86171]
d1ej2a_ : (MET4) (ASP31) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1ldna1 : (GLY97) (ARG118) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Bacillus stearothermophilus [TaxId: 1422]
d1yj5a2 : (GLU365) (GLY389) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |5' polynucleotide kinase-3' phosphatase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3m7wa_ : (ILE18) (ALA40) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Salmonella enterica [TaxId: 99287]
d1vlhb_ : (MET1) (ASP28) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Phosphopantetheine adenylyltransferase |Thermotoga maritima [TaxId: 2336]
d1mkzb_ : (THR131) (ASP156) [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Escherichia coli [TaxId: 562]
d2r0ba_ : (ARG81) (GLY113) [view usage] : c.45.1.0 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t3eb3 : (LYS619) (GLN647) [view usage] : c.57.1.2 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MoeA central domain-like |Gephyrin, domain 5 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3noeb_ : (PRO129) (VAL154) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.10, c.69, c.2, c.82, c.26, c.66, c.45, c.42, c.23, c.37, d.185, b.60, c.85, c.62, c.57, e.23, d.126, c.25,
c.51, c.61, b.55, d.142, c.49, d.145, d.15, a.26, d.47