Tableau information
Concept source: d2icyb2 amino acid (a.a.) range (GLN268)(SER285)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN268) (ILE272) E1
(PRO276) (VAL280) H2
(VAL280) (SER285) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -77.9° H2
H3 -116.8° -41.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h3na2 : (PHE258) (ALA272) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Leucyl-tRNA synthetase (LeuRS) |Thermus thermophilus [TaxId: 274]
d3oxnb_ : (GLY189) (GLN203) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d3qzua_ : (LEU124) (MET137) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus subtilis [TaxId: 224308]
d2wo3b_ : (ASN33) (HIS49) [view usage] : b.6.1.5 |Cupredoxin-like |Cupredoxins |Ephrin ectodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bsqa1 : (VAL33) (ALA72) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Trafficking protein B |Neisseria gonorrhoeae [TaxId: 485]
d3a2wa_ : (LYS168) (GLY182) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Aeropyrum pernix [TaxId: 272557]
d1tz7b_ : (MET209) (LYS226) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d1jfra_ : (PRO168) (PRO181) [view usage] : c.69.1.16 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Lipase |Lipase |Streptomyces exfoliatus [TaxId: 1905]
d1vw4z_ : (GLY96) (LEU111) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d3o6ta_ : (ALA8) (SER23) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4duca_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3cgha1 : (TYR77) (PHE92) [view usage] : a.118.8.6 |alpha-alpha superhelix |TPR-like |SusD-like |Uncharacterized protein BT3984 |Bacteroides thetaiotaomicron [TaxId: 818]
d2m1ra_ : (GLU220) (GLU245) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3oxnd_ : (ARG181) (GLN203) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d3bena_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d4jn6a1 : (ARG8) (ARG22) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2x80a_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1suoa_ : (SER96) (GLN109) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2b4 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1le9b2 : (GLY138) (GLY162) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1p9ag_ : (PRO206) (ASP222) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d4dtwa_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d4jv4a1 : (LEU221) (TYR244) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Cow (Bos taurus) [TaxId: 9913]
d1t4ma_ : (LEU124) (MET137) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase A |Bacillus subtilis [TaxId: 1423]
d3hjea1 : (ASN87) (ASP115) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1zo4a_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d2j1ma_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1na6b2 : (GLY365) (TYR400) [view usage] : c.52.1.22 |Restriction endonuclease-like |Restriction endonuclease-like |Type II restriction endonuclease catalytic domain |Restriction endonuclease EcoRII, C-terminal domain |Escherichia coli [TaxId: 562]
d1bvya_ : (ASP68) (GLY83) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d4ml2a_ : (GLN3) (HIS23) [view usage] : d.298.1.0 |RelE-like |RelE-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2pukg_ : (GLU8) (GLU23) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
d3qvga_ : (ASP876) (ALA888) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2p51a_ : (PRO21) (LEU40) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2p2ea1 : (LEU3) (ASP21) [view usage] : b.124.1.1 |HesB-like domain |HesB-like domain |HesB-like domain |Putative Fe-S biosynthesis protein LSL1730 |Lactobacillus salivarius [TaxId: 1624]
d1tz7a1 : (MET209) (LYS226) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d1v4va_ : (PRO199) (LEU214) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d3kj4a_ : (PRO261) (PHE278) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.82, c.69, c.94, a.104, i.1, a.118, c.68, c.47, c.55, c.87, b.2, b.6, c.120, c.52, b.51, d.298, c.15, b.124,
g.50