Tableau information
Concept source: d1vjka_ amino acid (a.a.) range (GLU21)(GLU48)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU21) (PRO26) E1
(VAL31) (HIS42) H2
(HIS42) (GLU48) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 123.6° H2
H3 -77.5° -124.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k5ma2 : (LEU682) (GLY717) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d1nywb_ : (TYR154) (HIS183) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d1tgza_ : (ILE539) (HIS585) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d4nhbb_ : (PHE150) (GLY187) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 525146]
d1k3wa2 : (SER106) (ARG124) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d4etmb_ : (ASP83) (GLU116) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2zv3b_ : (LYS2) (GLY48) [view usage] : c.131.1.0 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d4r1ra2 : (ILE459) (ARG511) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d2azxa1 : (LYS231) (VAL258) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Human (Homo sapiens) [TaxId: 9606]
d2r7da2 : (LYS196) (GLY234) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d2jmua1 : (VAL184) (SER214) [view usage] : d.63.1.2 |CYTH-like phosphatases |CYTH-like phosphatases |CYTH domain |Thiamine-triphosphatase (ThTPase) |Mouse (Mus musculus) [TaxId: 10090]
d1xq6a_ : (GLU186) (VAL203) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Hypothetical protein At5g02240 (T7H20_290) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2jnja_ : (GLY10) (ASP40) [view usage] : d.295.1.1 |TFB5-like |TFB5-like |TFB5-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kmoa_ : (ALA81) (HIS100) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d2f3la1 : (LEU106) (ARG137) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Lumenal RFR-domain protein |Cyanothece sp. atcc 51142 [TaxId: 43989]
d1b0ua_ : (GLU232) (LYS259) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ATP-binding subunit of the histidine permease |Salmonella typhimurium [TaxId: 90371]
d1nh1a_ : (ASP213) (MET262) [view usage] : e.45.1.1 |Antivirulence factor |Antivirulence factor |Antivirulence factor |Type III effector AvrB |Pseudomonas syringae [TaxId: 317]
d2b8ea2 : (THR437) (GLY476) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Cation-transporting ATPase |Archaeoglobus fulgidus [TaxId: 2234]
d1mt3a_ : (ASP268) (LEU293) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d3tpaa_ : (TYR410) (TYR437) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Haemophilus parasuis [TaxId: 456298]
d2hrxa1 : (ASP154) (SER189) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d2nr7a1 : (VAL33) (LYS78) [view usage] : d.2.1.9 |Lysozyme-like |Lysozyme-like |NMB1012-like |Putative secretion activator PG0293 |Porphyromonas gingivalis [TaxId: 837]
d3e4da_ : (PRO213) (LEU226) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1d2fa_ : (TYR322) (GLY357) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Modulator in mal gene expression, MalY |Escherichia coli [TaxId: 562]
d1g5ia1 : (LYS356) (THR394) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1d2aa_ : (LYS6) (ASN41) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vs5p1 : (GLY49) (ASN79) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Escherichia coli [TaxId: 562]
d1pvya_ : (SER147) (ASN176) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d3froa_ : (GLY372) (PHE412) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d2qzsa_ : (HIS207) (GLY239) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1ieza_ : (GLY28) (HIS61) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Escherichia coli [TaxId: 562]
d3erja_ : (GLN5) (GLY47) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1xrla_ : (ASP268) (LEU293) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d2klxa_ : (TYR60) (HIS85) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bartonella henselae [TaxId: 283166]
d3d1ja_ : (HIS207) (GLY239) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1rzwa_ : (MET1) (GLY47) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Hypothetical protein AF2095 |Archaeoglobus fulgidus [TaxId: 2234]
d3copa_ : (HIS207) (GLY239) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1zdxa1 : (GLY59) (LEU85) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
d2bfwa1 : (GLY372) (PHE412) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Pyrococcus abyssi [TaxId: 29292]
d1g5ha1 : (LYS356) (THR394) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2akea_ : (LYS231) (VAL258) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Human (Homo sapiens) [TaxId: 9606]
d1xrma_ : (ASP268) (LEU293) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d2kzna1 : (LEU121) (ASN142) [view usage] : b.88.1.3 |Mss4-like |Mss4-like |SelR domain |Peptide methionine sulfoxide reductase MsrB |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, b.82, c.67, c.69, c.94, c.2, c.26, f.4, b.40, c.37, c.7, c.47, d.2, d.3, c.87, c.51, b.113, d.15, d.63,
b.88, c.44, c.131, d.310, d.295, e.45, d.115, d.220, b.167, d.27