Tableau information
Concept source: d1ni3a1 amino acid (a.a.) range (LYS22)(TYR51)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS22) (MSE28) E1
(LYS33) (LYS42) H2
(SER43) (TYR51) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 145.8° H2
H3 -135.0° -56.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ni3a1 : (LYS22) (TYR51) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |YchF GTP-binding protein N-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2q9qb2 : (GLY201) (SER217) [view usage] : d.344.1.3 |GINS/PriA/YqbF domain |PriA/YqbF domain |SLD5 C-terminal domain-like |GINS complex subunit 4, SLD5 |Human (Homo sapiens) [TaxId: 9606]
d1iznc_ : (SER215) (ARG259) [view usage] : e.43.1.1 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz alpha-1 subunit |Capz alpha-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d2ozga2 : (ARG231) (ASP256) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase Ava4977 |Anabaena variabilis [TaxId: 1172]
d3n84a_ : (TRP60) (GLN77) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Growth factor receptor-bound protein 2 (GRB2) |Human (Homo sapiens) [TaxId: 9606]
d1vpka3 : (LYS252) (LYS275) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d1vsqc_ : (GLY215) (GLU238) [view usage] : c.38.1.0 |PTS IIb component |PTS IIb component |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1v30a_ : (GLY55) (TYR81) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein PH0828 |Pyrococcus horikoshii [TaxId: 53953]
d1v94b_ : (THR226) (GLU268) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1p8pa_ : (ILE93) (PRO116) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ct6a1 : (MET1) (LYS27) [view usage] : c.54.1.2 |PTS system fructose IIA component-like |PTS system fructose IIA component-like |DhaM-like |PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM |Lactococcus lactis [TaxId: 1358]
d1tyoa_ : (THR226) (GLU268) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d3p3ca2 : (LYS245) (LEU273) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |automated matches |Aquifex aeolicus [TaxId: 63363]
d3pewa2 : (LYS305) (ILE330) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1asya2 : (GLY340) (PRO385) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2bwod_ : (GLY254) (PHE276) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d2ofka_ : (GLN123) (GLY153) [view usage] : a.96.1.4 |DNA-glycosylase |DNA-glycosylase |3-Methyladenine DNA glycosylase I (Tag) |3-Methyladenine DNA glycosylase I (Tag) |Salmonella typhi [TaxId: 601]
d1brlb_ : (VAL230) (GLU253) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d3a2ba_ : (GLY250) (SER273) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Sphingobacterium multivorum [TaxId: 28454]
d1tyob_ : (THR226) (GLU268) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1k2vn_ : (ASP234) (MET258) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d2ccga_ : (PHE4) (ASP31) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1efdn_ : (ASP234) (MET258) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d3ff1a_ : (HIS3) (LEU50) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |automated matches |Staphylococcus aureus [TaxId: 93062]
d3vrqa2 : (GLY237) (ARG255) [view usage] : d.93.1.0 |SH2-like |SH2 domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4eb5a_ : (GLY344) (TYR380) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d2afig_ : (LYS84) (ASP118) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3i6ea2 : (ARG194) (GLN219) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 89184]
d1v7nx_ : (ARG117) (MET143) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Thrombopoietin |Human (Homo sapiens) [TaxId: 9606]
d1dt9a1 : (LEU253) (SER276) [view usage] : c.55.4.2 |Ribonuclease H-like motif |Translational machinery components |ERF1/Dom34 middle domain-like |Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 |Human (Homo sapiens) [TaxId: 9606]
d1v94a_ : (THR226) (GLY271) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1esza_ : (ASP234) (MET258) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.92, c.80, c.77, c.42, c.37, d.104, c.55, d.14, a.96, d.108, d.131, c.38, e.43, c.54, d.93, a.26, d.344, d.269