Tableau information
Concept source: d1ceva_ amino acid (a.a.) range (ASP42)(GLY96)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP42) (GLY47) E1
(ASN67) (GLY89) H2
(PHE91) (GLY96) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 160.5° H2
E3 -30.2° 160.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4v19q_ : (ILE160) (VAL190) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2q85a1 : (GLN18) (GLU48) [view usage] : d.145.1.2 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Escherichia coli [TaxId: 562]
d2axpb_ : (THR2) (SER33) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Hypothetical protein YorR |Bacillus subtilis [TaxId: 1423]
d1o63b_ : (LEU2) (SER31) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d2hhwa2 : (ASP830) (SER870) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d4dc9d_ : (ASN176) (ILE210) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |DNA repair protein Rad51, catalytic domain |Methanococcus voltae [TaxId: 2188]
d1s7hd_ : (SER154) (ASN190) [view usage] : d.58.48.2 |Ferredoxin-like |MTH1187/YkoF-like |Putative thiamin/HMP-binding protein YkoF |Putative thiamin/HMP-binding protein YkoF |Bacillus subtilis [TaxId: 1423]
d2afin_ : (VAL83) (ASP129) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1iaza_ : (ALA5) (GLU40) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d2vdca3 : (GLY2) (ALA49) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Azospirillum brasilense [TaxId: 192]
d3ai0a_ : (GLY404) (ALA443) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d3eyza2 : (ASP830) (SER870) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d1nvjb_ : (ALA2) (VAL38) [view usage] : d.41.5.1 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |Molybdopterin synthase subunit MoaE |Molybdopterin synthase subunit MoaE |Escherichia coli [TaxId: 562]
d3akca_ : (ILE4) (GLY34) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4jycc_ : (ARG57) (ASP92) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d2v5hh_ : (LYS2) (GLU32) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1qmfa1 : (SER634) (GLY664) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2dfxi1 : (SER67) (LEU106) [view usage] : d.311.1.1 |ImmE5-like |ImmE5-like |ImmE5-like |Colicin E5 immunity protein ImmE5 |Escherichia coli [TaxId: 562]
d3aa9c_ : (ALA10) (PRO44) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d3i41a_ : (ASP47) (GLY79) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 561307]
d1e1ea_ : (GLY408) (ALA456) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d4r0ba_ : (PRO113) (GLN155) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xffb_ : (CYS1) (VAL36) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glucosamine 6-phosphate synthase, N-terminal domain |Escherichia coli [TaxId: 562]
d3oojc1 : (ALA1) (VAL36) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4blua_ : (ALA237) (SER275) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iwga3 : (GLY570) (ASN613) [view usage] : d.58.44.1 |Ferredoxin-like |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |Escherichia coli [TaxId: 562]
d1tlua_ : (GLY74) (GLU111) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase (SamDC, SpeH) |Thermotoga maritima [TaxId: 2336]
d2v5hl_ : (LYS2) (GLU32) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1s1ma2 : (ASN4) (PRO43) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Escherichia coli [TaxId: 562]
d1epaa_ : (ALA109) (HIS150) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinoic acid-binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1a82a_ : (SER1) (LYS37) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Dethiobiotin synthetase |Escherichia coli [TaxId: 562]
d1fvaa_ : (GLN64) (GLY92) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Cow (Bos taurus) [TaxId: 9913]
d2v5hg_ : (LYS2) (GLU32) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d4mqrb_ : (GLN185) (GLU220) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1u8yb_ : (LEU12) (GLU41) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ras-related protein RalA |Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
d2l90a_ : (GLY62) (GLY92) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Mouse (Mus musculus) [TaxId: 10090]
d1e1eb_ : (GLY408) (ALA456) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d3cddb2 : (GLY110) (ASN135) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d2zavb_ : (ILE93) (ASP124) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cdna_ : (ARG2) (THR31) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1vfja_ : (LYS58) (PRO95) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Thermus thermophilus [TaxId: 274]
d1dzna1 : (GLY274) (ILE314) [view usage] : d.58.32.1 |Ferredoxin-like |FAD-linked oxidases, C-terminal domain |Vanillyl-alcohol oxidase-like |Vanillyl-alcohol oxidase |Fungus (Penicillium simplicissimum) [TaxId: 69488]
d1mbba1 : (GLN18) (GLY47) [view usage] : d.145.1.2 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Escherichia coli [TaxId: 562]
d1q3ta_ : (LYS15) (THR47) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2phoa_ : (ILE93) (ASP124) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Human (Homo sapiens) [TaxId: 9606]
d1nu4a_ : (HIS10) (ARG47) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicesomal U1A protein |Human (Homo sapiens) [TaxId: 9606]
d1g3ua_ : (LEU2) (ALA35) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1gwya_ : (GLY4) (ASN37) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d2pgcb_ : (ASN3) (SER46) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d2axpa1 : (THR2) (SER33) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Hypothetical protein YorR |Bacillus subtilis [TaxId: 1423]
d1gvnb_ : (ASN112) (PRO147) [view usage] : c.37.1.21 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Streptococcus pyogenes [TaxId: 1314]
d1zpwx1 : (SER35) (PRO68) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |Hypothetical protein TTP0101 (TT1823) |Thermus thermophilus [TaxId: 274]
d1naqe_ : (ALA10) (PRO44) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d1si9a_ : (LYS7) (THR50) [view usage] : d.58.4.4 |Ferredoxin-like |Dimeric alpha+beta barrel |Plant stress-induced protein |Boiling stable protein 1 |European aspen (Populus tremula) [TaxId: 113636]
d2v5hj_ : (LYS2) (GLU32) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1s07b_ : (ASN172) (GLU211) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1gl9b2 : (GLU255) (ARG283) [view usage] : c.37.1.16 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Helicase-like "domain" of reverse gyrase |Helicase-like "domain" of reverse gyrase |Archaeoglobus fulgidus [TaxId: 2234]
d2pgca1 : (ASN5) (SER46) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d3ncpa_ : (LYS58) (PRO95) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2wwfa_ : (LYS9) (PHE44) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.94, d.58, i.1, c.66, c.42, c.37, d.153, d.151, b.60, d.41, d.145, b.97, b.106, d.156, d.11, d.311