Tableau information
Concept source: d4pmua_ amino acid (a.a.) range (PHE98)(VAL153)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE98) (THR103) E1
(THR124) (THR144) H2
(GLN148) (VAL153) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 156.4° H2
E3 -25.9° 159.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4rkqa_ : (PRO292) (ARG338) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Arthrobacter sp. [TaxId: 290399]
d1k1ca_ : (VAL2) (GLU36) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d1qy7a_ : (MET1) (PHE36) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1ag1o_ : (GLN5) (THR44) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1iwaa1 : (ARG372) (GLY404) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
d3hs3a_ : (PRO273) (ARG315) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
d1wdja_ : (LEU3) (ARG30) [view usage] : c.52.1.27 |Restriction endonuclease-like |Restriction endonuclease-like |Hypothetical protein TT1808 (TTHA1514) |Hypothetical protein TT1808 (TTHA1514) |Thermus thermophilus [TaxId: 274]
d2ed6a1 : (GLY78) (PRO102) [view usage] : b.170.1.1 |WSSV envelope protein-like |WSSV envelope protein-like |WSSV envelope protein-like |Envelope protein VP28 |White spot syndrome virus, WSSV [TaxId: 92652]
d1qfra_ : (MET1) (LYS38) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Enterococcus faecalis [TaxId: 1351]
d1ggrb_ : (MET301) (ASN338) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Escherichia coli [TaxId: 562]
d1k9oi_ : (ASP99) (ASN132) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Alaserpin (serpin 1) |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d4faka_ : (LYS2) (PRO39) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d4rkqd_ : (PRO292) (ARG338) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Arthrobacter sp. [TaxId: 290399]
d1vsah1 : (LYS30) (ASN79) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Thermus thermophilus [TaxId: 274]
d1vp2a_ : (LYS3) (PRO31) [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 |Thermotoga maritima [TaxId: 2336]
d4tx6b_ : (ARG28) (GLY59) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d4b15a_ : (GLY8) (ASN48) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Tamarindus indica [TaxId: 58860]
d1mw7a_ : (SER200) (ASN238) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein HP0162 |Helicobacter pylori [TaxId: 210]
d2xtka_ : (PHE28) (GLY59) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d2df4a1 : (LEU87) (ASP125) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Glutamyl-tRNA(Gln) amidotransferase subunit A |Staphylococcus aureus [TaxId: 1280]
d1om0a_ : (GLY6) (SER36) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Xylanase inhibitor protein I, XIP-I |Wheat (Triticum aestivum) [TaxId: 4565]
d2yyba_ : (ASP183) (GLY209) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1vh0a_ : (LEU1) (PRO39) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |Hypothetical protein SAV0024/SA0023 |Staphylococcus aureus [TaxId: 1280]
d1y7pb2 : (LYS46) (GLU76) [view usage] : d.58.18.12 |Ferredoxin-like |ACT-like |AF1403 N-terminal domain-like |Hypothetical protein AF1403, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d3fysa_ : (ASN2) (ILE26) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3q94a_ : (GLY139) (ALA176) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d2xtkb_ : (SER29) (GLY59) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d1djna1 : (PRO293) (ARG322) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d2uy3a_ : (ASN28) (LEU58) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4txea_ : (THR27) (LEU58) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1wxaa1 : (ALA76) (LEU105) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Afadin |Mouse (Mus musculus) [TaxId: 10090]
d1sppb_ : (LYS41) (ASP62) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Major seminal plasma glycoprotein PSP-II |Pig (Sus scrofa) [TaxId: 9823]
d1sh7b_ : (ARG50) (ARG95) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Vibrio sp. [TaxId: 210249]
d1qr5a_ : (MET1) (ASN38) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Staphylococcus carnosus [TaxId: 1281]
d2aobb_ : (TRP60) (SER88) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Growth factor receptor-bound protein 2 (GRB2) |Human (Homo sapiens) [TaxId: 9606]
d1bxna1 : (MET377) (GLY406) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Alcaligenes eutrophus [TaxId: 106590]
d1xuoa_ : (ILE255) (ASP290) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d2v93a_ : (GLY5) (HIS39) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1kv5a_ : (GLN5) (THR44) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1tz7a1 : (MET1) (LEU44) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d1h1cc_ : (PHE283) (ARG311) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, d.58, c.117, c.93, c.135, c.62, c.41, c.116, c.51, c.52, e.1, d.15, d.93, c.119, d.94, b.23, e.39, c.21,
b.170