Tableau information
Concept source: d2duka_ amino acid (a.a.) range (THR93)(TRP111)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR93) (GLU97) E1
(ASP101) (GLY106) H2
(GLY106) (TRP111) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -41.5° H2
E3 -142.7° -122.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4tgla_ : (GLY175) (ASN200) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d1l3wa5 : (TYR469) (LEU487) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |C-cadherin ectodomain |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1mqta_ : (ARG13) (HIS52) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Swine vesicular disease virus coat proteins |Swine vesicular disease virus [TaxId: 12075]
d1ar71_ : (GLU31) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d4l3wa_ : (GLY203) (HIS228) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Rhizopus microsporus [TaxId: 4843]
d1piv1_ : (ASP29) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d1al21_ : (GLU31) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d1q55a_ : (TYR469) (LEU487) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d2duka_ : (THR93) (TRP111) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3s9yd_ : (TYR260) (HIS274) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d4q0ma_ : (GLY267) (ASP289) [view usage] : c.88.1.0 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1zq1a2 : (ARG370) (GLU391) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD |Pyrococcus abyssi [TaxId: 29292]
d2a73b2 : (GLY1388) (PHE1416) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |Complement C3 MG8 |Human (Homo sapiens) [TaxId: 9606]
d3sn2a2 : (GLU798) (TYR818) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3p3vb_ : (PHE120) (LYS145) [view usage] : c.38.1.0 |PTS IIb component |PTS IIb component |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d3pvja_ : (THR251) (LEU272) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d1lgya_ : (GLY176) (HIS201) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizopus niveus [TaxId: 4844]
d4kl8s_ : (ALA119) (VAL145) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfomicrobium baculatum [TaxId: 899]
d1vqza2 : (GLU52) (ARG67) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |LplA-like protein SP1160, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ar61_ : (GLU31) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d1keha_ : (ALA170) (HIS192) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Brevundimonas diminuta [TaxId: 293]
d1vbe1_ : (ASP29) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d1ar91_ : (GLU31) (HIS65) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d2x5ia_ : (ALA12) (TYR56) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human echovirus 7 [TaxId: 46018]
d2dg1d_ : (LEU8) (PRO36) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d1mx1b_ : (THR2151) (TYR2170) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d1mkfa_ : (PRO254) (LEU281) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d2ipla_ : (ASN91) (GLY109) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
d4fshb2 : (SER150) (GLU167) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d2dsod_ : (LEU8) (PRO36) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d3s8rb_ : (ASP167) (HIS192) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1d4m1_ : (MET18) (HIS52) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human coxsackievirus A9 [TaxId: 12067]
d3pvjb_ : (THR251) (LEU272) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d3ol6a_ : (HIS336) (PRO356) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d1frtc1 : (SER239) (ASP265) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fvya_ : (ASN91) (GLY109) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, c.1, b.82, c.69, c.2, c.93, d.104, d.153, b.121, b.1, c.8, c.38, c.88, e.19, d.113, i.20, b.116