Tableau information
Concept source: d1ry4a_ amino acid (a.a.) range (ASN215)(PRO251)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN215) (GLU220) E1
(THR230) (ASN241) H2
(LEU245) (PRO251) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 58.9° H2
E3 138.8° -132.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1n3wa_ : (ILE108) (THR128) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1jroa2 : (VAL49) (THR77) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Xanthine dehydrogenase chain A, N-terminal domain |Rhodobacter capsulatus [TaxId: 1061]
d1xg2a_ : (PHE199) (LEU219) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Solanum lycopersicum [TaxId: 4081]
d1g9xa_ : (GLU61) (GLN89) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d1fjja_ : (GLU112) (SER158) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbhB |Escherichia coli [TaxId: 562]
d2kg2a_ : (GLY74) (THR110) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kawa_ : (GLY51) (VAL88) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4gwza_ : (PRO119) (ARG140) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1n99a2 : (GLU235) (PRO271) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Syntenin 1 |Human (Homo sapiens) [TaxId: 9606]
d2eeja_ : (GLU52) (GLY88) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wnyb_ : (GLY88) (PRO106) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1b7ba_ : (ILE167) (CYS188) [view usage] : c.73.1.1 |Carbamate kinase-like |Carbamate kinase-like |Carbamate kinase |Carbamate kinase |Enterococcus faecium [TaxId: 1352]
d1wh1a_ : (GLY70) (LEU108) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA1095 |Human (Homo sapiens) [TaxId: 9606]
d1on3a2 : (ASP305) (ASN325) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) |Propionibacterium freudenreichii [TaxId: 1744]
d4r31e_ : (ASN192) (ALA215) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1jcea1 : (SER30) (ARG63) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d3tsra_ : (HIS81) (GLN104) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3k77a_ : (VAL89) (GLY112) [view usage] : b.18.1.8 |Galactose-binding domain-like |Galactose-binding domain-like |N-terminal domain of xrcc1 |N-terminal domain of xrcc1 |Human (Homo sapiens) [TaxId: 9606]
d3pdva_ : (GLY46) (SER83) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Homo sapiens, influenza a virus [TaxId: 9606]
d2xqza_ : (GLN93) (LEU119) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d2dmza_ : (ASN68) (ARG105) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wl7a_ : (ASN149) (ARG186) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1a25a_ : (MET256) (GLY273) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain from protein kinase c (beta) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3vx4a_ : (LYS582) (LEU607) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1oq1c_ : (LEU74) (PHE117) [view usage] : b.29.1.17 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Hypothetical protein YesU |Hypothetical protein YesU |Bacillus subtilis [TaxId: 1423]
d1xvya_ : (ALA99) (SER136) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Serratia marcescens, SfuA [TaxId: 615]
d2v90c_ : (GLY294) (GLU332) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bf2a2 : (LEU643) (ASN671) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Isoamylase |Pseudomonas amyloderamosa [TaxId: 32043]
d1l7la_ : (ALA93) (LYS118) [view usage] : b.18.1.16 |Galactose-binding domain-like |Galactose-binding domain-like |PA-IL, galactose-binding lectin 1 |PA-IL, galactose-binding lectin 1 |Pseudomonas aeruginosa [TaxId: 287]
d2qs4a_ : (PHE105) (VAL137) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3raea_ : (ALA217) (SER240) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1bg1a2 : (GLN361) (GLY388) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT3b |Mouse (Mus musculus) [TaxId: 10090]
d3ojvc2 : (ARG254) (TYR280) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e88a2 : (MET139) (PHE156) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Fibronectin |Human (Homo sapiens) [TaxId: 9606]
d1ry4a_ : (ASN215) (PRO251) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |GTPase-binding domain of the cell polarity protein par6 (Par-6B) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1rzxa_ : (ASN215) (ASN253) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |GTPase-binding domain of the cell polarity protein par6 (Par-6B) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1k3fa_ : (ASN194) (GLY218) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
d2w9lb_ : (ARG90) (ASN109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Coxsackie virus and adenovirus receptor (Car), domain 1 |Human (Homo sapiens) [TaxId: 9606]
d1fuxb_ : (HIS116) (ILE161) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbcL |Escherichia coli [TaxId: 562]
d4ikga_ : (PHE81) (LEU111) [view usage] : d.15.2.0 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1to6a_ : (GLY148) (GLU175) [view usage] : c.141.1.1 |Glycerate kinase I |Glycerate kinase I |Glycerate kinase I |Glycerate kinase GlxK |Neisseria meningitidis, (serogroup A) [TaxId: 487]
d1fuxa_ : (PRO115) (ILE161) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbcL |Escherichia coli [TaxId: 562]
d1x5na1 : (GLY62) (VAL96) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Harmonin |Human (Homo sapiens) [TaxId: 9606]
d4k89a_ : (ALA1) (ASN27) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d1v8ca1 : (ARG52) (PRO82) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |MoaD-related protein, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1vi3a_ : (GLU112) (GLU159) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbhB |Escherichia coli [TaxId: 562]
d2uzpa_ : (MET256) (GLY273) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l7vc_ : (GLY54) (GLN80) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1e7pa3 : (ALA253) (VAL282) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d1h79a_ : (ILE62) (CYS79) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1uw1a_ : (LEU40) (LEU68) [view usage] : k.42.1.1 |In vitro evolution products |In vitro evolution products |Function-directed selections |Artificial nucleotide binding protein (ANBP) |Synthetic
d1juva_ : (HIS88) (SER109) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Bacteriophage T4 [TaxId: 10665]
d1wifa_ : (ASP72) (TYR108) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) |Mouse (Mus musculus) [TaxId: 10090]
d1sf8c_ : (PRO536) (ASP573) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d2fcua_ : (CYS157) (LYS222) [view usage] : b.82.2.9 |Double-stranded beta-helix |Clavaminate synthase-like |PhyH-like |Syringomycin biosynthesis enzyme 2, SyrB2 |Pseudomonas syringae pv. syringae [TaxId: 321]
d4gafa_ : (LEU121) (SER152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ip9a_ : (ASN49) (ASP84) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Bud emergence mediator Bemp1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2vrfa_ : (GLY160) (ARG198) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ogkd_ : (LEU96) (LEU112) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypothetical protein AF2318 |Archaeoglobus fulgidus [TaxId: 2234]
d4bvhb_ : (ALA252) (PRO289) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vb3a1 : (MET1) (PRO32) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d2yb6a_ : (THR69) (ASP90) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc2b [TaxId: 9606]
d1pvya_ : (GLU97) (PRO145) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d1lb5a_ : (GLY351) (SER377) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 6 (TRAF6) |Human (Homo sapiens) [TaxId: 9606]
d2w3ra1 : (VAL49) (THR77) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d2i2qa_ : (GLY5) (MET32) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2i7pc1 : (GLU159) (ASP181) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
d1flka1 : (LEU354) (THR383) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 3 (TRAF3) |Human (Homo sapiens) [TaxId: 9606]
d1jcfa1 : (SER30) (ARG63) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d1ymqa1 : (ILE80) (GLU109) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
d1zd7a_ : (GLN91) (GLY134) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1h7ba_ : (ILE62) (CYS79) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1akla1 : (GLN399) (TYR419) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Pseudomonas aeruginosa [TaxId: 287]
d3sfjc_ : (GLY75) (GLN113) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2m3ma_ : (GLY368) (PRO405) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n7ta_ : (GLY63) (SER103) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Erbin |Human (Homo sapiens) [TaxId: 9606]
d1ctna3 : (TYR444) (THR471) [view usage] : d.26.3.1 |FKBP-like |Chitinase insertion domain |Chitinase insertion domain |Chitinase A |Serratia marcescens [TaxId: 615]
d1fbva4 : (ASP390) (PRO428) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |CBL |Human (Homo sapiens) [TaxId: 9606]
d2difa_ : (SER19) (SER48) [view usage] : g.43.1.1 |B-box zinc-binding domain |B-box zinc-binding domain |B-box zinc-binding domain |Tripartite motif-containing protein 39 |Human (Homo sapiens) [TaxId: 9606]
d1pvyb_ : (ILE103) (PRO145) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d2lc7a_ : (ASN215) (ASN253) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2ogpa_ : (GLY71) (GLU112) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1uhpa_ : (HIS63) (LEU98) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA1095 |Human (Homo sapiens) [TaxId: 9606]
d2lc6a_ : (ASN215) (LYS250) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ezma_ : (ALA1) (ASN27) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d1vaea_ : (GLY57) (SER98) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Rhophilin-2 |Mouse (Mus musculus) [TaxId: 10090]
d1gq8a_ : (LYS203) (LEU223) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Carrot (Daucus carota) [TaxId: 4039]
d4e34a_ : (GLY333) (VAL370) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2enoa_ : (GLY69) (GLN108) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h3lb_ : (GLY1372) (SER1411) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Erbin |Human (Homo sapiens) [TaxId: 9606]
d2fn5a_ : (ASN57) (GLU94) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.3, b.82, c.94, c.108, c.79, b.29, c.56, d.92, c.14, c.37, c.7, c.55, b.18, b.2, c.31, c.71, e.7, b.1, e.11,
d.20, c.73, b.42, d.5, d.168, d.109, d.15, b.7, d.26, b.71, b.17, b.36, g.44, c.141, d.77, b.8, b.86, g.14, d.115, g.43,
d.271, k.42