Tableau information
Concept source: d2o25b2 amino acid (a.a.) range (LEU39)(GLU64)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU39) (ALA44) E1
(THR49) (GLY54) H2
(GLY54) (GLU64) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -113.9° H2
E3 152.8° -88.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1cgwa4 : (LEU174) (ASN203) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d2qgxd_ : (ASP38) (PHE74) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f82a_ : (PRO378) (SER424) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1zs7a1 : (LYS91) (GLY120) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Hypothetical protein APE0525, C-terminal domain |Aeropyrum pernix [TaxId: 56636]
d2tbsa_ : (MET135) (SER164) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Atlantic salmon (Salmo salar) [TaxId: 8030]
d1ecfb1 : (GLY323) (ARG354) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d2qgxb_ : (ASP38) (PHE74) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1exfa_ : (LYS86) (ARG107) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d1po3a_ : (GLY129) (ARG150) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1qksa2 : (ASP412) (LEU438) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d2xbmb_ : (GLU112) (GLY129) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus [TaxId: 12637]
d2wgqa4 : (ASP678) (TRP711) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d2as0a1 : (MSE1) (GLY31) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein PH1915, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d3v61b2 : (PRO184) (MET199) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d6cgta4 : (TYR174) (ASN203) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d2eeka_ : (MET135) (HIS165) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d2cx0a1 : (LYS91) (GLY120) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Hypothetical protein APE0525, C-terminal domain |Aeropyrum pernix [TaxId: 56636]
d4mbzd_ : (GLU161) (ASP199) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |automated matches |Human polyomavirus 9 [TaxId: 943908]
d3swob1 : (THR207) (ASN229) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1q1pa1 : (THR32) (GLU54) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d3j39z_ : (GLY8) (VAL26) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2kwba_ : (MET1) (SER17) [view usage] : b.88.1.0 |Mss4-like |Mss4-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2fxta1 : (MET395) (GLY425) [view usage] : d.17.4.13 |Cystatin-like |NTF2-like |TIM44-like |Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3u73u3 : (GLY191) (GLY217) [view usage] : g.7.1.0 |Snake toxin-like |Snake toxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1maba3 : (VAL95) (GLY130) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of alpha subunit of F1 ATP synthase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2wgqb4 : (ASP678) (TRP711) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d3pmea1 : (GLU933) (ILE957) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1f8na1 : (VAL358) (TYR409) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L1 [TaxId: 3847]
d1uhwa_ : (TYR71) (PHE101) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Mouse (Mus musculus) [TaxId: 10090]
d2iwba_ : (THR412) (LEU432) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3g04c_ : (THR239) (ALA254) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xbma_ : (GLU112) (GLY129) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus [TaxId: 12637]
d1agja_ : (LYS108) (ARG125) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d4nr3b_ : (HIS36) (LEU58) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sxjh2 : (PRO184) (MSE199) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nrfa_ : (SER423) (LEU443) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin receptor BlaR, C-terminal domain |Bacillus licheniformis [TaxId: 1402]
d1bmfa3 : (VAL95) (ARG128) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of alpha subunit of F1 ATP synthase |Cow (Bos taurus) [TaxId: 9913]
d2pl5a1 : (ASN47) (ASN96) [view usage] : c.69.1.40 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |O-acetyltransferase |Homoserine O-acetyltransferase |Leptospira interrogans [TaxId: 173]
d2esqa1 : (TRP33) (PRO57) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch5b [TaxId: 9606]
d1duea_ : (LYS108) (LEU126) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.3, c.1, c.10, a.119, c.69, i.1, b.29, b.30, b.47, c.66, d.92, f.4, c.37, e.6, b.121, b.122, b.1, d.20, d.17,
c.61, d.131, a.4, b.88, g.7