Tableau information
Concept source: d3gnoa_ amino acid (a.a.) range (THR322)(PRO351)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR322) (ILE334) E1
(ASN340) (GLY346) H2
(GLY346) (PRO351) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -88.2° H2
E3 143.0° 107.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1f0za_ : (MET1) (GLY31) [view usage] : d.15.3.2 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |ThiS |Thiamin biosynthesis sulfur carrier protein ThiS |Escherichia coli [TaxId: 562]
d1iyqa_ : (GLN93) (THR118) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d1qqgb2 : (LYS161) (SER189) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Insulin receptor substrate 1, IRS-1 |Human (Homo sapiens) [TaxId: 9606]
d1b59a1 : (SER381) (ARG417) [view usage] : a.4.5.25 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Methionine aminopeptidase, insert domain |Methionine aminopeptidase, insert domain |Human (Homo sapiens) [TaxId: 9606]
d1t0ub_ : (THR111) (ALA132) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
d1k2fa_ : (CYS256) (SER280) [view usage] : b.8.1.2 |TRAF domain-like |TRAF domain-like |SIAH, seven in absentia homolog |SIAH, seven in absentia homolog |Mouse (Mus musculus) [TaxId: 10090]
d3k5la2 : (LEU682) (VAL731) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d1gzeb_ : (SER198) (PRO218) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum [TaxId: 1491]
d3mgaa1 : (ARG48) (ILE72) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1od5a2 : (GLY349) (TYR375) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
d3dcxa1 : (GLY9) (ILE40) [view usage] : b.55.1.13 |PH domain-like barrel |PH domain-like |BPHL domain |Uncharacterized protein Shew0819 |Shewanella loihica [TaxId: 359303]
d3pnsk_ : (THR115) (PRO136) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Vibrio cholerae [TaxId: 243277]
d3o61d_ : (GLU111) (ASP138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d2h11a_ : (VAL220) (GLU244) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1r4ca_ : (MET14) (ASP65) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d1wiaa_ : (LYS201) (PRO233) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like protein bab25500 (2010008E23Rik) |Mouse (Mus musculus) [TaxId: 10090]
d3bwia_ : (ARG241) (SER259) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d1iooa_ : (TYR4) (GLY33) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Gemetophytic self-incompatibility associated SF11-RNase |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d2lpva_ : (GLN21) (THR50) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1gpma2 : (ALA111) (ASP138) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GMP synthetase |Escherichia coli [TaxId: 562]
d1w3ua_ : (VAL168) (GLY194) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
d1rifa_ : (PHE29) (LEU53) [view usage] : c.37.1.23 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |DNA helicase UvsW |DNA helicase UvsW |Bacteriophage T4 [TaxId: 10665]
d1ghia_ : (LYS93) (LEU119) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d3qrdc_ : (MET14) (ILE56) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d2z02a_ : (PRO94) (TYR128) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1vhwe_ : (MET108) (ALA130) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Vibrio cholerae [TaxId: 666]
d1opma1 : (LYS165) (ARG195) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2zkql1 : (GLU99) (VAL125) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d3s67a_ : (GLY12) (ILE56) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d3dj3b_ : (THR58) (GLN79) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4r7ta_ : (ARG158) (THR187) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |automated matches |Vibrio cholerae [TaxId: 243277]
d2id2a_ : (GLU119) (LEU146) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d2gqra_ : (PRO88) (LEU122) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2prvb_ : (VAL58) (ILE90) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein YobK |Bacillus subtilis [TaxId: 1423]
d1twja_ : (MET1) (GLU48) [view usage] : d.284.1.1 |PurS-like |PurS-like |PurS subunit of FGAM synthetase |PurS subunit of FGAM synthetase |Bacillus subtilis [TaxId: 1423]
d1tgoa2 : (VAL661) (LYS705) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Thermococcus gorgonarius [TaxId: 71997]
d2esda_ : (GLU119) (LEU146) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d1zy9a2 : (PHE261) (SER301) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Alpha-galactosidase GalA catalytic domain |Thermotoga maritima [TaxId: 2336]
d1jc5d_ : (ARG126) (TYR145) [view usage] : d.32.1.4 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Methylmalonyl-CoA epimerase |Methylmalonyl-CoA epimerase |Propionibacterium shermanii [TaxId: 1752]
d1xhnb_ : (GLY118) (THR159) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ps8a_ : (GLY12) (ASP65) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d2fe3a_ : (GLY100) (GLY134) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3l3ma2 : (ASP139) (GLU181) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |Poly(ADP-ribose) polymerase, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3oa4a_ : (GLN117) (LYS137) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus halodurans [TaxId: 272558]
d1we4a_ : (GLN93) (THR118) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d2p84a1 : (LYS6) (ALA26) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Orf041 product |Staphylococcus phage 37 [TaxId: 320840]
d1wkma2 : (LEU204) (TYR237) [view usage] : a.4.5.25 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Methionine aminopeptidase, insert domain |Methionine aminopeptidase, insert domain |Pyrococcus furiosus [TaxId: 2261]
d1hcna_ : (CYS32) (SER57) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) |Human (Homo sapiens) [TaxId: 9606]
d1xhnd_ : (GLY118) (THR159) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a78b_ : (SER198) (PRO218) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum [TaxId: 1491]
d3e11b_ : (LEU45) (ASN73) [view usage] : d.92.1.17 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TTHA0227-like |Uncharacterized protein Acel_2062 |Acidothermus cellulolyticus [TaxId: 28049]
d2prva1 : (VAL58) (ILE90) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein YobK |Bacillus subtilis [TaxId: 1423]
d1mjta_ : (ILE123) (LEU160) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Staphylococcus aureus [TaxId: 1280]
d1mpsm_ : (GLY31) (TYR51) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d2e9qa2 : (GLY304) (TYR330) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pumpkin (Cucurbita maxima) [TaxId: 3661]
d2fe3b_ : (GLY100) (GLY134) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3mica1 : (LYS165) (ARG195) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2bzga1 : (LYS219) (GLU244) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d4iuga2 : (GLU439) (ASN466) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1euha_ : (GLU119) (LEU146) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Streptococcus mutans [TaxId: 1309]
d2qcqb_ : (ARG11) (SER38) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2biea1 : (GLY188) (ILE207) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Bacillus alcalophilus [TaxId: 1445]
d3c49a2 : (GLN325) (GLY365) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ny6h_ : (PHE209) (GLY225) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d2gbrc_ : (ARG47) (LEU76) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qi1a_ : (GLU119) (LEU146) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Streptococcus mutans [TaxId: 1309]
d1vhjb_ : (MET108) (ALA130) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Vibrio cholerae [TaxId: 666]
d3a2fa2 : (ILE663) (GLY701) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d3l8cb_ : (LEU301) (LYS323) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301450]
d1iysa_ : (GLN93) (THR118) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d1wnya_ : (VAL205) (LEU224) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |automated matches |Thermus thermophilus [TaxId: 274]
d1iyna_ : (LEU165) (THR196) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Ascorbate peroxidase |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1b0la2 : (SER490) (ASP510) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d2j3zd2 : (ILE374) (ASN393) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d2id2c_ : (GLU119) (LEU146) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d1sv6a_ : (GLY53) (THR81) [view usage] : d.177.1.1 |FAH |FAH |FAH |2-keto-4-pentenoate hydratase MhpD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, b.82, c.67, c.94, i.1, c.82, c.56, c.66, d.92, c.124, a.93, c.23, c.37, d.166, b.121, f.26, d.174, d.32,
b.1, e.23, b.45, d.143, d.17, d.124, d.177, b.55, a.4, d.15, b.51, d.113, d.26, b.71, g.17, b.36, d.284, b.8, b.172, d.369