Tableau information
Concept source: d1kfwa2 amino acid (a.a.) range (ALA355)(ASP371)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA355) (TYR359) E1
(TYR359) (LEU365) H2
(THR367) (ASP371) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -91.2° H2
E3 -84.2° -102.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pmzf_ : (THR76) (ALA92) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2ykna1 : (LYS22) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1j5ob_ : (GLY18) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2hy5b1 : (ILE314) (PHE336) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |Intracellular sulfur oxidation protein DsrF |Chromatium vinosum [TaxId: 1049]
d3ek1a_ : (LEU365) (GLY388) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2noca1 : (ALA21) (THR45) [view usage] : d.230.6.1 |Dodecin subunit-like |YdgH-like |YdgH-like |Putative periplasmic protein YahO |Salmonella enterica [TaxId: 28901]
d2jdla_ : (ARG222) (ASN244) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId: 3677]
d2ykma1 : (GLY18) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1qpba1 : (ARG258) (GLY286) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Pyruvate decarboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4w6yb_ : (ARG108) (GLN121) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1boha1 : (ALA8) (ASP32) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d1ebla2 : (SER176) (ALA194) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
d1j3bb2 : (GLN76) (LEU104) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
d4krlb_ : (ALA103) (GLN116) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d3czua_ : (LYS27) (PRO47) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4eh1b1 : (ASP81) (ASP108) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1dmua_ : (LYS276) (ASP296) [view usage] : c.52.1.4 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BglI |Restriction endonuclease BglI |Bacillus subtilis [TaxId: 1423]
d1vcza_ : (PHE6) (TYR26) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |Nicotiana glutinosa [TaxId: 35889]
d4qiid_ : (GLY156) (ALA174) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4tvsa_ : (SER106) (GLN120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Vicugna pacos [TaxId: 30538]
d1esma_ : (ASP194) (ASP230) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Pantothenate kinase PanK |Escherichia coli [TaxId: 562]
d1iyba_ : (PHE6) (TYR26) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |RNase NW |Nicotiana glutinosa [TaxId: 35889]
d1q4ka1 : (THR459) (GLY494) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ckma2 : (GLY58) (GLU81) [view usage] : d.142.2.3 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |mRNA capping enzyme |RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d1ny721 : (ASP134) (VAL150) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |CPMV (Cowpea mosaic virus) [TaxId: 12264]
d2gska_ : (PHE385) (ASN409) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d1poxa1 : (ALA257) (GLY284) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Pyruvate oxidase |Lactobacillus plantarum [TaxId: 1590]
d1hnvb_ : (GLY18) (PRO52) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3h77a2 : (ASP180) (PRO198) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1boia1 : (ALA8) (ASP32) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d3mrwa_ : (ARG222) (ASN242) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Momordica balsamina [TaxId: 3672]
d4b0ia_ : (HIS5) (PRO29) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1ub7a2 : (ARG174) (CYS192) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Thermus thermophilus [TaxId: 274]
d3sh1d_ : (THR76) (ALA92) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2br7a_ : (THR74) (ALA90) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1yqna_ : (ASP126) (LYS156) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
d1rhda1 : (GLN3) (LEU31) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d2cela_ : (ASN70) (GLY88) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d2khsa_ : (GLY86) (VAL114) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1xkvb2 : (GLN76) (LEU104) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
d4cela_ : (ASN70) (GLY88) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d1j7qa_ : (ASN29) (LYS49) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcium vector protein |Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]
d1hpzb_ : (LYS22) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1no5b_ : (TRP76) (ILE101) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |Hypothetical protein HI0073 |Haemophilus influenzae [TaxId: 727]
d1bryy_ : (ARG222) (ASN242) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Bryodin |Red briony (Bryonia dioica) [TaxId: 3652]
d4n1hb_ : (SER105) (GLN119) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2lw8a_ : (ASN3) (LEU24) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fyha_ : (PHE4) (GLU35) [view usage] : d.61.1.0 |LigT-like |LigT-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1hnib_ : (GLY18) (PRO52) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3uyyb_ : (ASP318) (VAL358) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1opla3 : (PRO242) (HIS265) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Abelsone tyrosine kinase (abl) |Mouse (Mus musculus) [TaxId: 10090]
d1c1ma_ : (GLY18) (ARG36) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Elastase |Pig (Sus scrofa) [TaxId: 9823]
d4jeia_ : (THR5) (PRO40) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d1dj2a_ : (VAL91) (GLY114) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1vd1a_ : (PHE6) (TYR26) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |Nicotiana glutinosa [TaxId: 35889]
d3qo9a1 : (GLY18) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3dhwc1 : (GLY66) (PHE88) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Methionine import ATP-binding protein MetN |Escherichia coli [TaxId: 562]
d2fo0a3 : (PRO242) (HIS265) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Abelsone tyrosine kinase (abl) |Human (Homo sapiens) [TaxId: 9606]
d3bn9a_ : (GLY18) (LEU36) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Matriptase MTSP1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, b.29, c.82, b.47, c.14, d.165, f.4, d.144, b.40, c.37, c.95, b.18, b.121, c.31, e.17, b.1, b.96, c.109, d.38,
d.124, d.79, d.142, c.52, a.39, b.43, c.46, d.218, d.26, d.223, c.114, d.230, d.61