Tableau information
Concept source: d1fona_ amino acid (a.a.) range (ASP36)(GLY56)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP36) (THR40) E1
(ALA41) (SER46) H2
(THR50) (GLY56) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 108.0° H2
E3 100.3° 131.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hpga_ : (ALA49) (ALA68) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Glutamic acid-specific protease |Streptomyces griseus [TaxId: 1911]
d4liha_ : (SER339) (GLU382) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d2c54a1 : (TRP59) (LEU76) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |GDP-mannose-3', 5'-epimerase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2wn6a1 : (LYS94) (GLY142) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium difficile [TaxId: 1496]
d1ud9a1 : (ALA1) (PRO31) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Sulfolobus tokodaii [TaxId: 111955]
d2g2xb_ : (TRP4) (GLY28) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |automated matches |Pseudomonas putida [TaxId: 160488]
d3i44a_ : (HIS320) (ASP371) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d1x45a1 : (GLY55) (ASN90) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) |Human (Homo sapiens) [TaxId: 9606]
d2ix2b1 : (MET1) (VAL29) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1rwza1 : (MET1) (LEU30) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Archaeoglobus fulgidus [TaxId: 2234]
d3rqzc_ : (PRO151) (ASP170) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Sphaerobacter thermophilus [TaxId: 479434]
d2izob1 : (MET1) (THR31) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3k4xa1 : (LEU2) (CYS30) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1on8a_ : (ASP153) (PHE178) [view usage] : c.68.1.15 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Exostosin |Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) |Mouse (Mus musculus) [TaxId: 10090]
d3fcca_ : (VAL303) (LYS325) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d1cz4a2 : (VAL98) (GLU131) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |C-terminal domain of VAT-N, VAT-Nc |Thermoplasma acidophilum [TaxId: 2303]
d1s3sf1 : (GLU80) (PRO104) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |Membrane fusion ATPase p97 N-terminal domain , P97-Nn |Mouse (Mus musculus) [TaxId: 10090]
d2io4b1 : (MET1) (VAL30) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d2ijxa1 : (MET1) (LYS30) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d4l6pa1 : (MET1) (LYS31) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1bh6a_ : (SER161) (ASP181) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d2g2xa1 : (TRP4) (GLY28) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |Hypothetical protein PP5205 |Pseudomonas putida kt2440 [TaxId: 160488]
d2hd9a1 : (TYR3) (PRO25) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |Hypothetical protein PH1033 |Pyrococcus horikoshii [TaxId: 53953]
d1a49a1 : (ASN154) (ASP176) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1af4a_ : (SER161) (ASP181) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d3gpna1 : (MET1) (GLU32) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ls6b_ : (HIS136) (GLU174) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d1s02a_ : (SER161) (ASP181) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d1ozia_ : (ASP68) (LEU100) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Phosphatase hPTP1e |Mouse (Mus musculus) [TaxId: 10090]
d2hiic1 : (MSE1) (PHE29) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1vb5b_ : (GLY192) (GLU219) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Putative eIF-2B subunit 2-like protein PH0440 |Pyrococcus horikoshii [TaxId: 53953]
d2vz6b_ : (GLY130) (GLY158) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a73b8 : (ARG1560) (LEU1585) [view usage] : b.40.3.3 |OB-fold |TIMP-like |Netrin-like domain (NTR/C345C module) |Complement C3 domain C345C |Human (Homo sapiens) [TaxId: 9606]
d1ti2a2 : (GLY444) (TRP463) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Transhydroxylase alpha subunit, AthL |Pelobacter acidigallici [TaxId: 35816]
d2rq0a_ : (ALA46) (PRO71) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2hiib1 : (MSE2) (VAL30) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3qq8a1 : (GLU80) (PRO104) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |Membrane fusion ATPase p97 N-terminal domain , P97-Nn |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.81, c.2, d.159, c.68, c.82, b.47, c.124, d.144, b.40, d.166, b.60, b.122, e.23, c.41, b.52, d.131, b.36, d.31, b.58, d.115