Tableau information
Concept source: d1pyqa_ amino acid (a.a.) range (GLY25)(ASN49)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY25) (ASP30) E1
(GLN31) (ALA37) H2
(ILE45) (ASN49) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 92.4° H2
E3 89.7° 105.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yloa1 : (ALA122) (THR147) [view usage] : b.49.3.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |Aminopeptidase/glucanase lid domain |Aminopeptidase/glucanase lid domain |Aminopeptidase YpdE |Shigella flexneri [TaxId: 623]
d3cdda2 : (ALA32) (ILE65) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d1cz4a1 : (GLY65) (LYS89) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of VAT-N, VAT-Nn |Thermoplasma acidophilum [TaxId: 2303]
d1pyqb_ : (GLY25) (ASN49) [view usage] : b.52.2.1 |Double psi beta-barrel |ADC-like |Pyruvoyl dependent aspartate decarboxylase, ADC |Pyruvoyl dependent aspartate decarboxylase, ADC |Escherichia coli [TaxId: 562]
d1nysc_ : (GLU25) (GLY51) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Type II activin receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2q1ma1 : (GLY145) (LEU169) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Glucocorticoid-induced TNF-related ligand, TNFSF18 |Human (Homo sapiens) [TaxId: 9606]
d1rqra1 : (LEU273) (ALA298) [view usage] : b.141.1.1 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |5'-fluoro-5'-deoxyadenosine synthase |Streptomyces cattleya [TaxId: 29303]
d1pt0b_ : (SER25) (ASN49) [view usage] : b.52.2.1 |Double psi beta-barrel |ADC-like |Pyruvoyl dependent aspartate decarboxylase, ADC |Pyruvoyl dependent aspartate decarboxylase, ADC |Escherichia coli [TaxId: 562]
d1ac5a_ : (LEU49) (GLY75) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Serine carboxypeptidase II |Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
d1qdna1 : (GLY58) (PHE85) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d4tmza2 : (VAL823) (PRO844) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1hg8a_ : (GLY102) (GLN133) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Fusarium moniliforme [TaxId: 117187]
d4m75b_ : (ASN42) (ARG63) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2qqdf_ : (ASN16) (PRO63) [view usage] : d.155.1.2 |Pyruvoyl-dependent histidine and arginine decarboxylases |Pyruvoyl-dependent histidine and arginine decarboxylases |Arginine decarboxylase |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d2zc5b_ : (PRO553) (ASP581) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2qqdc_ : (ASN16) (PRO63) [view usage] : d.155.1.2 |Pyruvoyl-dependent histidine and arginine decarboxylases |Pyruvoyl-dependent histidine and arginine decarboxylases |Arginine decarboxylase |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3cdde2 : (ALA32) (ILE65) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d4a19e_ : (LEU74) (SER99) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2cmza1 : (VAL235) (PRO262) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |Spike glycoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d1e4ea1 : (GLY47) (LEU69) [view usage] : c.30.1.2 |PreATP-grasp domain |PreATP-grasp domain |D-Alanine ligase N-terminal domain |D-alanine:D-lactate ligase VanA, N-domain |Enterococcus faecium [TaxId: 1352]
d1jzua_ : (VAL16) (PHE41) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Lipocalin q83 |Common quail (Coturnix coturnix) [TaxId: 9091]
d1cr5a1 : (GLY77) (ALA101) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]
d4tmzb2 : (VAL823) (PRO844) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1znca_ : (ARG213) (SER259) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), isozyme IV [TaxId: 9606]
d1cr5b1 : (GLY77) (ALA101) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]
d2q6oa2 : (LEU246) (PRO271) [view usage] : b.141.1.0 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |automated matches |automated matches |Salinispora tropica [TaxId: 369723]
d1dgsa2 : (SER352) (LYS377) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |NAD+-dependent DNA ligase |Thermus filiformis [TaxId: 276]
d1qcsa1 : (GLY58) (LEU82) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d2vbsa_ : (ILE106) (LYS131) [view usage] : b.43.5.2 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |CTP-dependent riboflavin kinase-like |CTP-dependent riboflavin kinase, Rfk |Methanococcus jannaschii [TaxId: 2190]
d1lcaa_ : (PRO280) (PRO308) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1j3na1 : (MET1) (ASP55) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Thermus thermophilus [TaxId: 274]
d4db5a_ : (GLY93) (LEU117) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.3, c.69, i.1, b.74, d.117, b.40, c.95, b.60, b.52, b.22, d.155, b.38, c.30, b.43, b.49, g.7, e.76, b.106, b.141