Tableau information
Concept source: d4d9cc_ amino acid (a.a.) range (LEU21)(ARG39)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU21) (PRO25) E1
(PRO25) (LEU31) H2
(ARG33) (ARG39) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -53.7° H2
E3 143.4° 147.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bm9b_ : (VAL210) (ALA234) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d1x8ja_ : (PRO10) (LYS37) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |automated matches |Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]
d3dh1a_ : (LEU14) (ASN51) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x8ka_ : (PRO10) (LYS37) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |automated matches |Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]
d1efab2 : (ILE289) (ARG326) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
d4giia_ : (GLU1053) (TYR1080) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qr3a_ : (ALA5) (PRO30) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Hypocrea jecorina [TaxId: 51453]
d1frfl_ : (GLY14) (ASN36) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio fructosovorans [TaxId: 878]
d4lfhg2 : (LYS135) (GLU159) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ewga1 : (ASN31) (PRO52) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d4rgba_ : (PRO252) (ASP282) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d3qdge2 : (GLU125) (LEU147) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c8fe_ : (SER198) (PRO218) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 1491]
d4gvja_ : (GLU1053) (TYR1080) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wfha_ : (ARG814) (LEU832) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wfha_ : (SER838) (ILE856) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dh1d_ : (ASN13) (ASN51) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hmkb_ : (PRO27) (CYS46) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1lo0h2 : (SER126) (PRO153) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2is8a_ : (ASP89) (GLY118) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4lhbb_ : (ASP99) (GLN133) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d3rglb_ : (TYR52) (PRO83) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 197]
d1ta4a2 : (GLY224) (GLY269) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Aspartate beta-semialdehyde dehydrogenase |Haemophilus influenzae [TaxId: 727]
d2rkba_ : (VAL16) (GLU39) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tbqr1 : (HIS13) (HIS44) [view usage] : g.68.1.1 |Kazal-type serine protease inhibitors |Kazal-type serine protease inhibitors |Ovomucoid domain III-like |Blood-sucking insect-derived tryptase inhibitor |Rhodnius prolixus, rhodniin [TaxId: 13249]
d2bm8b_ : (VAL210) (ARG231) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d1pwea_ : (VAL9) (MET31) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1chca_ : (ASN17) (ILE57) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |Immediate early protein, IEEHV |Equine herpesvirus 1 [TaxId: 10326]
d2bzhb_ : (THR196) (ARG221) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wgha_ : (ARG66) (ALA97) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like protein 3, Ubl3 |Mouse (Mus musculus) [TaxId: 10090]
d1rqxc_ : (PRO17) (ARG38) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Pseudomonas sp., strain ACP [TaxId: 306]
d3tn7a_ : (GLY197) (SER227) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermococcus sibiricus [TaxId: 604354]
d1dd8a1 : (ARG30) (ASN51) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d4ewgb1 : (ASN31) (PRO52) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d4giha_ : (GLU1053) (TYR1080) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wmxa_ : (ASP209) (GLY245) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d1s48a_ : (GLU265) (PRO290) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d1hdoa_ : (ALA162) (GLN204) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Biliverdin IX beta reductase |Human (Homo sapiens) [TaxId: 9606]
d1p8ta_ : (SER239) (LEU257) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Reticulon 4 receptor (Nogo-66 receptor, Ngr) |Human (Homo sapiens) [TaxId: 9606]
d1irfa_ : (ASP90) (PRO113) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor-2, IRF-2 |Mouse (Mus musculus) [TaxId: 10090]
d1ozna_ : (SER70) (LEU88) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Reticulon 4 receptor (Nogo-66 receptor, Ngr) |Human (Homo sapiens) [TaxId: 9606]
d3l77a_ : (GLY197) (SER227) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermococcus sibiricus [TaxId: 604354]
d3uzua_ : (VAL173) (PRO200) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d4d9eb_ : (THR19) (ARG39) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1z3ix1 : (TRP700) (ARG729) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d1j0ca_ : (PRO17) (ARG38) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d4npcb_ : (GLY220) (ASP251) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]
d1j5sb_ : (GLY292) (ASN316) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
d1th0b_ : (GLY498) (SER533) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d1ggla_ : (PHE70) (GLN83) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein III |Human (Homo sapiens) [TaxId: 9606]
d1j0ea_ : (PRO17) (ARG38) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d1yxsa_ : (THR196) (ARG221) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Proto-oncogene serine/threonine-protein kinase Pim-1 |Human (Homo sapiens) [TaxId: 9606]
d1vcoa2 : (GLU195) (SER223) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1u0nd_ : (THR161) (LEU179) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d3hmka_ : (PRO27) (CYS46) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1pwha_ : (VAL9) (MET31) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2br5a_ : (VAL210) (ALA233) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d3l6ca_ : (PRO27) (CYS46) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1efaa2 : (ILE289) (ARG326) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
d1tuej_ : (TYR173) (GLY194) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d3dsda_ : (LYS310) (ILE333) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d1f2da_ : (PRO17) (ARG38) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d1fmja_ : (PRO10) (LYS37) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |Retinol dehydratase |Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]
d1mb4a2 : (GLY223) (GLY269) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Aspartate beta-semialdehyde dehydrogenase |Vibrio cholerae [TaxId: 666]
d1j5sa_ : (GLY292) (ASN316) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
d3kj4a_ : (SER70) (LEU88) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4npca_ : (GLY220) (ASP251) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]
d1feua_ : (PRO101) (HIS121) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.10, c.2, d.159, c.79, c.66, c.93, e.18, d.144, c.37, d.104, d.166, c.95, b.60, d.3, d.81, c.57, b.1, c.97,
b.91, a.4, d.15, g.44, g.68, b.53