Tableau information
Concept source: d1bc4a_ amino acid (a.a.) range (ARG36)(THR64)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG36) (ILE42) E1
(SER44) (THR53) H2
(MET58) (THR64) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 96.7° H2
E3 72.3° 122.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qwrb_ : (PRO48) (LYS90) [view usage] : b.82.1.3 |Double-stranded beta-helix |RmlC-like cupins |Type I phosphomannose isomerase |Mannose-6-phosphate isomerase ManA |Bacillus subtilis [TaxId: 1423]
d3ohaa1 : (CYS25) (GLN55) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1h1ha_ : (ASN39) (PHE76) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Eosinophil cationic protein (ECP), ribonuclease 3 |Human (Homo sapiens) [TaxId: 9606]
d1gqva_ : (ASN39) (SER76) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Eosinophil-derived neurotoxin (EDN) |Human (Homo sapiens) [TaxId: 9606]
d3ojmb2 : (ARG255) (VAL269) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3cjia_ : (ALA102) (SER121) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Seneca valley virus [TaxId: 390157]
d3ohba1 : (CYS25) (GLN55) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e0ta1 : (GLU104) (VAL125) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Escherichia coli [TaxId: 562]
d1lopa_ : (PHE123) (GLU164) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d2e1ba1 : (ASN66) (ILE87) [view usage] : b.43.3.6 |Reductase/isomerase/elongation factor common domain |Translation proteins |AlaX-M N-terminal domain-like |AlaX-M trans-editing enzyme, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d3tsra_ : (PRO43) (SER78) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2e0ma_ : (VAL43) (SER77) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1na6b1 : (GLY39) (SER72) [view usage] : b.142.1.1 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |Type II restriction endonuclease effector domain |Restriction endonuclease EcoRII, N-terminal domain |Escherichia coli [TaxId: 562]
d1zx8a1 : (ILE98) (PHE121) [view usage] : b.62.1.3 |Cyclophilin-like |Cyclophilin-like |TM1367-like |Hypothetical protein TM1367 |Thermotoga maritima [TaxId: 2336]
d1idka_ : (LYS47) (PRO65) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type A [TaxId: 5061]
d1r6zz1 : (PRO599) (ASN619) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3q1ya_ : (LYS31) (ILE59) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Listeria innocua [TaxId: 1642]
d1clha_ : (GLY121) (PRO166) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d4lcxa_ : (PRO89) (ALA112) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2cu2a2 : (HIS110) (ARG140) [view usage] : c.68.1.20 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |mannose-1-phosphate guanylyl transferase |Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 |Thermus thermophilus [TaxId: 274]
d2btwa1 : (ASP195) (SER238) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d1r6zp1 : (PRO599) (ASN619) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1o73a_ : (ALA11) (SER36) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin I |Trypanosoma brucei brucei [TaxId: 5702]
d1cpja_ : (GLU3) (GLY24) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1gyma_ : (THR77) (LYS116) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
d1pyya4 : (GLY453) (GLU476) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2x (pbp-2x), transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ymwa_ : (PRO42) (SER77) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d4d00c_ : (PRO89) (SER112) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d1h6qa_ : (GLU60) (SER78) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2nrca2 : (GLU93) (SER119) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1a5pa_ : (VAL43) (SER77) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d2nrbb2 : (GLU93) (SER119) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1nunb2 : (ARG255) (VAL269) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2b [TaxId: 9606]
d4ocnd_ : (HIS5) (VAL36) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2qvja_ : (GLY99) (ASP114) [view usage] : a.260.1.1 |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleocapsid protein |Nucleoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d4d00a_ : (PRO89) (SER112) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d3tsrb_ : (PRO43) (SER78) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3di9a_ : (VAL43) (SER77) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d2kmla_ : (VAL119) (ILE157) [view usage] : c.56.1.1 |Phosphorylase/hydrolase-like |HybD-like |Hydrogenase maturating endopeptidase HybD |Hydrogenase maturating endopeptidase HybD |Escherichia coli [TaxId: 562]
d2rala2 : (TYR509) (PHE530) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, e.3, c.1, b.82, b.19, c.68, c.56, c.124, c.72, c.47, b.121, d.3, b.2, b.1, c.97, b.62, b.34, d.5, b.43,
b.88, b.58, a.260, b.142