Tableau information
Concept source: d1ytya2 amino acid (a.a.) range (VAL113)(THR145)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL113) (GLY117) E1
(ASP125) (GLY135) H2
(GLY135) (THR145) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 128.5° H2
E3 -54.0° 146.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2obva1 : (GLY69) (LEU110) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gxjb_ : (GLN543) (LEU573) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d4kysa_ : (ASN42) (ASP76) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Clostridium botulinum [TaxId: 441770]
d1fupa_ : (ALA223) (THR260) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d1vl5a_ : (ASP145) (LYS174) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein BH2331 |Bacillus halodurans [TaxId: 86665]
d1zq7b_ : (GLN108) (GLY135) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Methanosarcina mazei [TaxId: 2209]
d3ea1a_ : (ILE141) (LYS162) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
d2naca1 : (ASP308) (PRO331) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Formate dehydrogenase |Pseudomonas sp., strain 101 [TaxId: 306]
d1iylb1 : (ASN166) (THR211) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
d1dkrb1 : (PRO95) (ASP133) [view usage] : c.61.1.2 |PRTase-like |PRTase-like |Phosphoribosylpyrophosphate synthetase-like |Phosphoribosylpyrophosphate synthetase |Bacillus subtilis [TaxId: 1423]
d1bmra_ : (ASN11) (CYS37) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |LQH III alpha-like toxin, LQH |Hebraei scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]
d1wscb_ : (PRO123) (GLY150) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d1ddta2 : (GLY52) (TYR85) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Diphtheria toxin, N-terminal domain |Corynebacterium diphtheriae [TaxId: 1717]
d1dy2a_ : (VAL85) (ALA120) [view usage] : d.169.1.5 |C-type lectin-like |C-type lectin-like |Endostatin |Endostatin domain of collagen alpha1(xv) |Mouse (Mus musculus) [TaxId: 10090]
d2q9ub1 : (ASN103) (ASP132) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Nitric oxide reductase N-terminal domain |Giardia intestinalis [TaxId: 5741]
d1fura_ : (ALA223) (THR260) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
d4kysb_ : (ASN42) (ASP76) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Clostridium botulinum [TaxId: 441770]
d2ai6a1 : (LYS41) (GLY75) [view usage] : d.322.1.1 |PHP14-like |PHP14-like |Janus/Ocnus |Phosphohistidine phosphatase 1, PHP14 |Human (Homo sapiens) [TaxId: 9606]
d1rrvb_ : (GLU192) (GLY215) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-vancosaminyltransferase GftD |Amycolatopsis orientalis [TaxId: 31958]
d1ogmx2 : (ASN214) (PRO238) [view usage] : b.80.1.10 |Single-stranded right-handed beta-helix |Pectin lyase-like |Dextranase, catalytic domain |Dextranase, catalytic domain |Penicillium minioluteum [TaxId: 28574]
d1w6va1 : (TYR89) (ARG115) [view usage] : d.324.1.1 |DUSP-like |DUSP-like |DUSP, domain in ubiquitin-specific proteases |Ubiquitin carboxyl-terminal hydrolase 15 |Human (Homo sapiens) [TaxId: 9606]
d1gxkb_ : (GLN543) (LEU573) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d2e7ga1 : (SER134) (GLN183) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Human (Homo sapiens) [TaxId: 9606]
d4caja_ : (LEU230) (GLY255) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1t8qa_ : (GLU30) (LEU66) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d2hsjd_ : (LYS55) (ILE90) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Uncharacterized protein SP1450 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3qvqa_ : (GLN10) (ASP43) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d1ta8a_ : (ILE84) (GLY123) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d2v4mb_ : (VAL607) (VAL635) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ofda3 : (THR172) (THR209) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Synechocystis sp. [TaxId: 1143]
d3ngya_ : (ARG114) (PHE143) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1yt3a3 : (SER74) (THR103) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Ribonuclease D, catalytic domain |Escherichia coli [TaxId: 562]
d2u2fa_ : (HIS2) (LYS35) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicing factor U2AF 65 KDa subunit |Human (Homo sapiens) [TaxId: 9606]
d3hy9b_ : (LYS317) (ARG367) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2glua1 : (ASP115) (SER144) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d3a2fa1 : (THR33) (GLU72) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1fzcb1 : (VAL205) (ASP230) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d3qvqd_ : (GLN10) (ASP43) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d1yfea_ : (ALA223) (THR260) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3n1fa_ : (ASP88) (GLU131) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ndnb1 : (GLY69) (LEU110) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1y5ha3 : (VAL12) (GLY40) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |Hypothetical protein Rv2626c |Mycobacterium tuberculosis [TaxId: 1773]
d1exsa_ : (LEU117) (PRO151) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Pig (Sus scrofa) [TaxId: 9823]
d4l1za_ : (ALA5) (GLN45) [view usage] : d.151.1.2 |DNase I-like |DNase I-like |Inositol polyphosphate 5-phosphatase (IPP5) |automated matches |Bedbug (Cimex lectularius) [TaxId: 79782]
d10mha_ : (VAL36) (ASP60) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus haemolyticus [TaxId: 726]
d2c35b2 : (ILE5) (ASN53) [view usage] : d.230.1.1 |Dodecin subunit-like |N-terminal, heterodimerisation domain of RBP7 (RpoE) |N-terminal, heterodimerisation domain of RBP7 (RpoE) |N-terminal, heterodimerisation domain of RBP7 (RpoE) |Human (Homo sapiens) [TaxId: 9606]
d1xxla_ : (ASP115) (SER144) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d2disa1 : (ASN8) (TYR42) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hypothetical protein FLJ20273 |Human (Homo sapiens) [TaxId: 9606]
d4ndnc1 : (GLY69) (GLN113) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3n1mb_ : (ASP88) (GLU131) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qvqc_ : (GLN10) (ASP43) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d4hqva_ : (MET260) (CYS281) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 264203]
d2kyxa_ : (ARG6) (ASP40) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lsta_ : (LEU3) (HIS27) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d1h65c_ : (LYS156) (SER212) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
d3qvqb_ : (GLN10) (ASP43) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d2fwea_ : (ASN430) (TYR457) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.94, c.2, d.58, d.157, c.66, c.80, d.92, a.127, c.23, c.37, c.47, c.55, d.166, d.153, d.171, d.151, b.60, d.169,
c.87, d.108, d.37, c.61, d.142, d.65, d.130, d.52, g.3, d.230, d.215, d.324, d.309, d.322