Tableau information
Concept source: d4ir8b_ amino acid (a.a.) range (THR235)(PRO260)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR235) (GLY241) E1
(GLY241) (GLN253) H2
(GLN254) (PRO260) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 142.4° H2
E3 -53.7° -152.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1l2wd_ : (PRO52) (TRP80) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d2gg6a_ : (GLY395) (ASP424) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1fo4a6 : (ARG233) (GLY260) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Xanthine oxidase, domain 3 (?) |Cow (Bos taurus) [TaxId: 9913]
d1vsqc_ : (VAL240) (SER262) [view usage] : c.38.1.0 |PTS IIb component |PTS IIb component |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1vd6a_ : (PRO8) (ARG47) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2exra2 : (GLU435) (LEU480) [view usage] : d.58.32.0 |Ferredoxin-like |FAD-linked oxidases, C-terminal domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ou7a_ : (LYS76) (ASN123) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3cmbd_ : (LEU102) (ALA126) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1boha1 : (ALA33) (ASP59) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d1kita1 : (PHE27) (THR50) [view usage] : b.29.1.8 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae [TaxId: 666]
d1twye_ : (GLU55) (SER83) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d3bpfb_ : (ASN127) (SER149) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Falcipain 2 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1d9aa_ : (GLY44) (LYS78) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hu antigen C (Huc) |Mouse (Mus musculus) [TaxId: 10090]
d1v8ea1 : (PRO8) (ARG47) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Putative glycerophosphodiester phosphodiesterase TTHB141 |Thermus thermophilus [TaxId: 274]
d2llna_ : (GLU9) (ALA45) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Thermus thermophilus, ba3 type [TaxId: 274]
d4lega_ : (ARG108) (LEU139) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4eh1a2 : (ASP204) (PRO238) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2bjra1 : (GLY90) (CYS114) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]
d2dp9a_ : (LEU6) (ARG29) [view usage] : b.122.1.5 |PUA domain-like |PUA domain-like |Hypothetical protein TTHA0113 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1dela_ : (LEU3) (ALA33) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxynucleoside monophosphate kinase |Bacteriophage T4 [TaxId: 10665]
d1ffuc2 : (GLU7) (GLY33) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1r8pa_ : (PRO3) (SER33) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 16 [TaxId: 333760]
d1boia1 : (ALA33) (ASP59) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d2e29a1 : (MET63) (VAL90) [view usage] : d.58.7.5 |Ferredoxin-like |RNA-binding domain, RBD |GUCT domain |ATP-dependent RNA helicase DDX50 |Human (Homo sapiens) [TaxId: 9606]
d1h43a_ : (ARG249) (PRO311) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3hsda_ : (THR1) (THR35) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d2a0ub_ : (GLY271) (PRO298) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Initiation factor 2b |Leishmania major [TaxId: 5664]
d1u9wa_ : (ALA104) (LEU139) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d1teva_ : (LEU4) (SER33) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |UMP/CMP kinase |Human (Homo sapiens) [TaxId: 9606]
d3ezsa_ : (PHE309) (ALA336) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1djna1 : (VAL27) (ASN64) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d2uy3a_ : (LYS101) (ASP150) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fq9a_ : (ALA107) (HIS138) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rhda1 : (ALA33) (ASP59) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Rhodanese |Cow (Bos taurus) [TaxId: 9913]
d1m5ha1 : (LYS19) (ILE58) [view usage] : d.58.33.1 |Ferredoxin-like |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Archaeoglobus fulgidus [TaxId: 2234]
d3ch0a_ : (PHE8) (LYS47) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d1zykc2 : (ASN73) (GLY108) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d1r1na_ : (TYR168) (ILE192) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d2k9ca_ : (HIS112) (LYS151) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Macrophage elastase (MMP-12) |Human (Homo sapiens) [TaxId: 9606]
d4m5na_ : (HIS-1) (THR35) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1vpqa_ : (GLU42) (LYS72) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |Hypothetical protein TM1631 |Thermotoga maritima [TaxId: 2336]
d1zxya2 : (ASN73) (GLY108) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d3w9va_ : (ALA183) (TYR210) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
d1fp7b_ : (GLY1057) (ARG1097) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d3kuea_ : (THR1) (THR35) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1ryza_ : (THR111) (GLY154) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Salmonella typhimurium [TaxId: 90371]
d1jhja_ : (VAL30) (GLY58) [view usage] : b.18.1.9 |Galactose-binding domain-like |Galactose-binding domain-like |APC10-like |APC10/DOC1 subunit of the anaphase-promoting complex |Human (Homo sapiens) [TaxId: 9606]
d1l2wa_ : (PRO52) (TRP80) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1qhna_ : (ARG4) (GLY35) [view usage] : c.37.1.3 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Chloramphenicol phosphotransferase |Chloramphenicol phosphotransferase |Streptomyces venezuelae [TaxId: 54571]
d1dsna_ : (ARG249) (PRO311) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d2exra1 : (LEU63) (ALA91) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ggda_ : (GLY395) (ASP424) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1hi9a_ : (THR52) (ASP81) [view usage] : c.99.1.1 |Dipeptide transport protein |Dipeptide transport protein |Dipeptide transport protein |Zn-dependent D-aminopeptidase DppA |Bacillus subtilis [TaxId: 1423]
d1t8qb_ : (ASN29) (LYS70) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d3hcxa_ : (THR1) (THR35) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli K-12 [TaxId: 83333]
d2qswa1 : (GLY312) (ILE342) [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN2 |Enterococcus faecalis [TaxId: 1351]
d3r5ta_ : (ARG53) (THR79) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1gxja_ : (GLN543) (PRO572) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d2krra2 : (GLY131) (GLY170) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleolin |Human (Homo sapiens) [TaxId: 9606]
d1rf8a_ : (LEU62) (PHE96) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2idra_ : (GLY63) (CYS99) [view usage] : d.86.1.0 |eIF4e-like |eIF4e-like |automated matches |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, d.68, d.58, b.29, c.56, c.92, d.92, c.124, d.144, c.37, b.18, d.3, b.6, b.122, e.7, d.347, c.25, d.145,
c.38, c.46, c.27, d.86, d.198, c.99, d.215, b.169