Tableau information
Concept source: d1d6sa_ amino acid (a.a.) range (ASN109)(GLN141)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN109) (GLU114) E1
(MET119) (ALA131) H2
(TYR137) (GLN141) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 133.0° H2
E3 -54.8° -150.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ftra2 : (GLY167) (PHE200) [view usage] : d.58.33.1 |Ferredoxin-like |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Methanopyrus kandleri [TaxId: 2320]
d1mi6a_ : (CYS128) (ILE166) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d1h6ha_ : (GLY50) (PRO90) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p40phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d1n3bb_ : (TYR3) (ASP31) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Dephospho-CoA kinase |Escherichia coli [TaxId: 562]
d3l20b_ : (PRO9) (LEU35) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Staphylococcus aureus [TaxId: 367830]
d1a5ab_ : (GLU155) (GLY189) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
d4empa_ : (ASP172) (PRO192) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Staphylococcus aureus [TaxId: 196620]
d1vytb2 : (PRO179) (ARG216) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2cq3a1 : (GLY163) (ASN194) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA-binding protein 9 |Human (Homo sapiens) [TaxId: 9606]
d2zv3b_ : (VAL52) (ASP81) [view usage] : c.131.1.0 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d4ib2b_ : (GLU183) (ASN205) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruminococcus gnavus [TaxId: 411470]
d1gmyb_ : (GLU171) (HIS190) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Human (Homo sapiens) [TaxId: 9606]
d1twye_ : (ALA181) (SER205) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d1vs5j1 : (ILE6) (ARG37) [view usage] : d.58.15.1 |Ferredoxin-like |Ribosomal protein S10 |Ribosomal protein S10 |Ribosomal protein S10 |Escherichia coli [TaxId: 562]
d3szab_ : (TYR281) (ALA311) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mh6a_ : (PHE260) (GLU295) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Bleomycin resistance protein, BRP |Klebsiella pneumoniae [TaxId: 573]
d2ooxa1 : (VAL456) (PRO485) [view usage] : d.129.6.2 |TBP-like |KA1-like |Ssp2 C-terminal domain-like |Snf1-like protein kinase ssp2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2zi8a2 : (GLY144) (PRO175) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1rtza_ : (TYR4) (THR35) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d2f5tx1 : (LYS249) (ILE276) [view usage] : b.38.5.1 |Sm-like fold |TrmB C-terminal domain-like |TrmB C-terminal domain-like |Transcriptional regulator TrmB |Thermococcus litoralis [TaxId: 2265]
d1rqea2 : (ASP236) (LEU270) [view usage] : c.1.10.5 |TIM beta/alpha-barrel |Aldolase |HMGL-like |Transcarboxylase 5S subunit, N-terminal domain |Propionibacterium freudenreichii shermanii [TaxId: 1752]
d1z6aa3 : (SER495) (GLU525) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d2hrua4 : (LYS514) (SER548) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d2ihr1_ : (ILE112) (VAL148) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d1m5sa2 : (GLY164) (PHE197) [view usage] : d.58.33.1 |Ferredoxin-like |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Methanosarcina barkeri [TaxId: 2208]
d1vkja_ : (GLN60) (ALA87) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |Heparan sulfate 3-O-sulfotransferase |Mouse (Mus musculus) [TaxId: 10090]
d4h80a_ : (TYR281) (ALA311) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zrha_ : (GLN23) (ALA50) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1teva_ : (PHE89) (PHE116) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |UMP/CMP kinase |Human (Homo sapiens) [TaxId: 9606]
d2nula_ : (GLY119) (SER163) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1h3da1 : (ARG6) (HIS35) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Escherichia coli [TaxId: 562]
d4lojb_ : (CYS205) (ASP222) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qztb_ : (ASN268) (GLY295) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Methanosarcina thermophila [TaxId: 2210]
d3pilb_ : (LYS17) (VAL46) [view usage] : d.58.28.0 |Ferredoxin-like |Peptide methionine sulfoxide reductase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1diza2 : (MET1) (ASP32) [view usage] : d.129.1.2 |TBP-like |TATA-box binding protein-like |DNA repair glycosylase, N-terminal domain |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d3hpva1 : (PHE68) (PRO97) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Pseudomonas sp. [TaxId: 237609]
d1b23p3 : (LYS9) (ASP46) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
d2b8ta1 : (ILE11) (PRO48) [view usage] : c.37.1.24 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Type II thymidine kinase |Thymidine kinase, TK1, N-terminal domain |Ureaplasma urealyticum [TaxId: 2130]
d1a7ge_ : (PRO294) (SER324) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 31 [TaxId: 10585]
d1wn2a_ : (VAL58) (ASP87) [view usage] : c.131.1.0 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3szaa_ : (TYR281) (ALA311) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ss4a_ : (VAL12) (GLY35) [view usage] : d.32.1.6 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Hypothetical protein BC1747 |Hypothetical protein BC1747 |Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]
d3rh5a3 : (ASP190) (GLU232) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase beta, catalytic (31 kD) fragment |Human (Homo sapiens) [TaxId: 9606]
d1t3la2 : (PRO229) (ARG266) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1f9fd_ : (PRO288) (SER318) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 18 [TaxId: 333761]
d1vrpa2 : (LEU127) (PRO175) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Creatine kinase, C-terminal domain |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d1qh4a2 : (LEU127) (ALA175) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Creatine kinase, C-terminal domain |Chicken (Gallus gallus), brain-type [TaxId: 9031]
d2gaxa1 : (PRO57) (GLU87) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Hypothetical protein Atu0240 |Agrobacterium tumefaciens [TaxId: 358]
d1qk1a2 : (LEU122) (ARG170) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Creatine kinase, C-terminal domain |Human (Homo sapiens), mitochondria [TaxId: 9606]
d1r8ha_ : (SER282) (SER315) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 6a [TaxId: 37122]
d1t90a_ : (PHE322) (ARG354) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, d.58, i.1, c.79, c.82, c.77, c.14, d.129, c.37, d.3, d.32, b.62, d.128, d.139, b.38, d.218, e.38, c.131, d.387,
d.189