Tableau information
Concept source: d2vyaa_ amino acid (a.a.) range (ARG326)(PRO362)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG326) (THR332) E1
(PRO340) (GLY357) H2
(HIS358) (PRO362) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -161.1° H2
E3 -43.3° -136.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2h62c_ : (GLU70) (ARG103) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1weka_ : (PRO38) (GLY75) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d3daob_ : (PHE111) (ASP137) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
d1fyva_ : (HIS638) (HIS669) [view usage] : c.23.2.1 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |Toll/Interleukin receptor TIR domain |Toll-like receptor 1, TLR1 |Human (Homo sapiens) [TaxId: 9606]
d4p31a_ : (ASP64) (PRO84) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1soua_ : (LYS43) (GLY77) [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |Hypothetical protein aq_1731 |Aquifex aeolicus [TaxId: 63363]
d3vgda2 : (ASN368) (PHE414) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Sulfolobus solfataricus, km1 [TaxId: 2287]
d2bhna2 : (PRO19) (LYS46) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d1eiwa_ : (VAL1) (PRO33) [view usage] : c.23.3.1 |Flavodoxin-like |Hypothetical protein MTH538 |Hypothetical protein MTH538 |Hypothetical protein MTH538 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3s2sd_ : (SER2) (GLU57) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d1nm3b1 : (SER171) (GLU198) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |C-terminal, Grx domain of Hybrid-Prx5 |Haemophilus influenzae [TaxId: 727]
d2bgwb2 : (ARG18) (LYS46) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d2bhza3 : (ASN391) (PHE439) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Deinococcus radiodurans [TaxId: 1299]
d1m8ga_ : (ASP99) (PRO123) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3cm0a_ : (GLU78) (GLY108) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Thermus thermophilus [TaxId: 274]
d3kuub_ : (PRO92) (ALA125) [view usage] : c.23.8.1 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |Yersinia pestis [TaxId: 632]
d1ocka_ : (ARG223) (ILE260) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
d1klka_ : (SER6) (GLY58) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
d2obia_ : (VAL36) (PHE73) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ct7a_ : (LYS2) (ASP35) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1y5eb_ : (LYS12) (THR48) [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Bacillus cereus [TaxId: 1396]
d1ai9a_ : (ASN5) (GLY55) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d3qb4d_ : (THR72) (ARG103) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d2uz4a_ : (LEU12) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |automated matches |Haemophilus parahaemolyticus [TaxId: 735]
d1l7ba_ : (GLY10) (ASP39) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |NAD+-dependent DNA ligase, domain 4 |Thermus thermophilus [TaxId: 274]
d2fcab_ : (GLY147) (THR174) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Bacillus subtilis [TaxId: 1423]
d1ji0a_ : (GLY66) (PRO86) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Branched chain aminoacid ABC transporter |Thermotoga maritima, TM1139 [TaxId: 2336]
d1sr3a_ : (ASP35) (GLY64) [view usage] : b.40.9.1 |OB-fold |Heme chaperone CcmE |Heme chaperone CcmE |Heme chaperone CcmE |Escherichia coli [TaxId: 562]
d3pc8d_ : (GLY853) (GLN881) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3znj2_ : (MET1) (ARG45) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
d1xaca_ : (ALA4) (PHE39) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Chimera (Thermus thermophilus) and (Bacillus subtilis) [TaxId: 274]
d1ivya_ : (ASP266) (PRO301) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Human 'protective protein', HPP |Human (Homo sapiens) [TaxId: 9606]
d1y5ec_ : (LYS12) (THR48) [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Bacillus cereus [TaxId: 1396]
d2z6ua_ : (LEU12) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus parahaemolyticus [TaxId: 735]
d2zcja_ : (LEU12) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus parahaemolyticus [TaxId: 735]
d3nyib_ : (MSE1) (VAL25) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Eubacterium ventriosum [TaxId: 411463]
d2h3ma_ : (GLY80) (LYS109) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o9ia_ : (VAL215) (ASN244) [view usage] : a.25.1.3 |Ferritin-like |Ferritin-like |Manganese catalase (T-catalase) |Manganese catalase (T-catalase) |Lactobacillus plantarum [TaxId: 1590]
d3nyia_ : (MSE1) (VAL25) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Eubacterium ventriosum [TaxId: 411463]
d1ej2a_ : (ASP99) (PRO123) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3j6vk_ : (THR148) (ILE176) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d3daoa_ : (ASP110) (ASP137) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
d1cjsa_ : (LYS59) (ARG81) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus jannaschii [TaxId: 2190]
d3rdwa_ : (ASP3) (LEU33) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, d.58, i.1, c.108, c.26, c.117, c.66, c.77, c.124, c.23, b.40, c.37, c.47, c.57, c.71, a.25, c.33, c.52, c.129,
c.119, e.24, c.15, b.36, g.7