Tableau information
Concept source: d3lpeb_ amino acid (a.a.) range (GLY29)(LEU55)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY29) (ASN35) E1
(GLU40) (GLY46) H2
(GLY51) (LEU55) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -119.6° H2
E3 148.7° 60.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gaha_ : (SER340) (SER365) [view usage] : a.102.1.1 |alpha/alpha toroid |Six-hairpin glycosidases |Glucoamylase |Glucoamylase |Aspergillus awamori, variant x100 [TaxId: 105351]
d1ag2a_ : (SER132) (TYR162) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d3itbd1 : (ASP63) (SER94) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2df7l_ : (GLY122) (SER168) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d3p8ta_ : (LYS90) (GLU122) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Pyrococcus abyssi [TaxId: 29292]
d2fyea_ : (GLY128) (GLY165) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
d3i2bg_ : (GLN11) (ASN52) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dgia_ : (GLY127) (ARG164) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ah7a_ : (HIS51) (PRO100) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d2vu9a2 : (LYS1234) (VAL1287) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |automated matches |Clostridium botulinum [TaxId: 36826]
d2r7da2 : (ALA291) (PRO322) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d3vb9a_ : (GLU454) (VAL482) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1i7hc_ : (HIS52) (ARG102) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |Adrenodoxin-like ferredoxin |Escherichia coli [TaxId: 562]
d3bzca3 : (THR193) (PRO218) [view usage] : a.294.1.1 |Tex N-terminal region-like |Tex N-terminal region-like |Tex N-terminal region-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d3d12b_ : (PHE78) (ASP105) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4i2va_ : (THR111) (SER135) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Yersinia pseudotuberculosis [TaxId: 633]
d2k02a_ : (VAL46) (ARG79) [view usage] : a.4.5.62 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein YhgG |automated matches |Klebsiella pneumoniae [TaxId: 72407]
d1l6ua_ : (THR54) (PRO108) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |Adrenodoxin |Cow (Bos taurus) [TaxId: 9913]
d1mlvb1 : (TYR312) (TYR347) [view usage] : a.166.1.1 |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |Pea (Pisum sativum) [TaxId: 3888]
d3eyca_ : (GLY15) (THR43) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Von Ebner's gland protein (VEGP, tear lipocalin) |Human (Homo sapiens) [TaxId: 9606]
d2nyya4 : (LYS1236) (VAL1287) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1xaca_ : (ASN102) (GLU133) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Chimera (Thermus thermophilus) and (Bacillus subtilis) [TaxId: 274]
d4jf8a_ : (GLY184) (PRO226) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella birtlesii [TaxId: 111504]
d2lxna_ : (ALA99) (LYS126) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d4nhfa_ : (HIS192) (ASN232) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d3hj5b_ : (GLY127) (ARG164) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c0ia2 : (GLY1241) (ALA1287) [view usage] : d.16.1.3 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |D-aminoacid oxidase-like |D-aminoacid oxidase |Rhodotorula gracilis [TaxId: 5286]
d1v5ba_ : (ASN104) (GLU135) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Bacillus coagulans [TaxId: 1398]
d1mlvc1 : (TYR312) (TYR347) [view usage] : a.166.1.1 |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |Pea (Pisum sativum) [TaxId: 3888]
d3haka_ : (GLY127) (ARG164) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v5bb_ : (PHE102) (GLU135) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Bacillus coagulans [TaxId: 1398]
d3gbhc_ : (TYR158) (LYS192) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d1r3ua_ : (PRO61) (ILE90) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Thermoanaerobacter tengcongensis [TaxId: 119072]
d3gbha_ : (TYR158) (LYS192) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d1i7ha_ : (HIS52) (TYR103) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |Adrenodoxin-like ferredoxin |Escherichia coli [TaxId: 562]
d3lpeb_ : (GLY29) (LEU55) [view usage] : g.41.9.0 |Rubredoxin-like |RNA polymerase subunits |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3u73u2 : (TYR92) (SER117) [view usage] : g.7.1.0 |Snake toxin-like |Snake toxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2glvb_ : (SER10) (ALA38) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Helicobacter pylori [TaxId: 210]
d1u3ma_ : (ALA136) (ASP172) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Chicken (Gallus gallus) [TaxId: 9031]
d4hpsa_ : (GLN-1) (PHE33) [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Xenorhabdus bovienii [TaxId: 406818]
d2i85a_ : (LYS106) (VAL140) [view usage] : b.6.1.5 |Cupredoxin-like |Cupredoxins |Ephrin ectodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gaia_ : (SER340) (SER365) [view usage] : a.102.1.1 |alpha/alpha toroid |Six-hairpin glycosidases |Glucoamylase |Glucoamylase |Aspergillus awamori, variant x100 [TaxId: 105351]
d1agma_ : (SER340) (SER365) [view usage] : a.102.1.1 |alpha/alpha toroid |Six-hairpin glycosidases |Glucoamylase |Glucoamylase |Aspergillus awamori, variant x100 [TaxId: 105351]
d1xsza2 : (ALA271) (PRO298) [view usage] : d.129.9.1 |TBP-like |RalF, C-terminal domain |RalF, C-terminal domain |RalF, C-terminal domain |Legionella pneumophila [TaxId: 446]
d3vb9b_ : (GLY453) (VAL482) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1mlva1 : (TYR312) (TYR347) [view usage] : a.166.1.1 |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |Pea (Pisum sativum) [TaxId: 3888]
d1wcdj1 : (GLY122) (SER168) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
d1atka_ : (GLY129) (GLY168) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.56, a.102, c.77, d.129, c.23, b.40, d.104, b.60, b.121, d.3, d.96, b.6, b.42, d.17, d.38, c.61, a.4, d.90, d.15,
d.16, d.6, g.7, g.41, a.294, e.65, a.166