Tableau information
Concept source: d1jqia2 amino acid (a.a.) range (SER169)(PRO192)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER169) (ASP178) E1
(GLN182) (ILE186) H2
(SER187) (PRO192) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 148.4° H2
E3 151.5° -36.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ecca1 : (GLY323) (ALA355) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d2o14a1 : (ARG53) (ALA71) [view usage] : b.18.1.32 |Galactose-binding domain-like |Galactose-binding domain-like |YxiM N-terminal domain-like |Hypothetical protein YxiM |Bacillus subtilis [TaxId: 1423]
d3pfdc1 : (THR173) (MET194) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d1ae6h1 : (ASN56) (THR73) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d2vo9a1 : (VAL84) (LEU136) [view usage] : d.65.1.5 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |VanY-like |L-alanyl-D-glutamate peptidase Ply |Listeria phage A500 [TaxId: 40522]
d1oy2a_ : (LEU53) (PHE117) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Shc adaptor protein |Human (Homo sapiens) [TaxId: 9606]
d4tpwb_ : (ARG42) (THR68) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Human (Homo sapiens) [TaxId: 9606]
d1fswa_ : (GLY115) (TRP142) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d1sija3 : (ILE282) (GLU305) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Aldehyde oxidoreductase, domain 3 |Desulfovibrio gigas [TaxId: 879]
d1pyqb_ : (ILE85) (GLY111) [view usage] : b.52.2.1 |Double psi beta-barrel |ADC-like |Pyruvoyl dependent aspartate decarboxylase, ADC |Pyruvoyl dependent aspartate decarboxylase, ADC |Escherichia coli [TaxId: 562]
d1txaa_ : (CYS21) (CYS42) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Toxin B (long neurotoxin) |King cobra (Ophiophagus hannah) [TaxId: 8665]
d1y3ja_ : (ASN1) (TYR47) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qica_ : (GLY221) (HIS237) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lgpa_ : (GLY100) (SER122) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Cell cycle checkpoint protein Chfr |Human (Homo sapiens) [TaxId: 9606]
d2j4jf_ : (ARG198) (GLU224) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1pxza_ : (VAL279) (ARG300) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d1ilr2_ : (LYS9) (VAL49) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1fiqc1 : (ILE667) (GLU690) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Xanthine oxidase, domain 5 (?) |Cow (Bos taurus) [TaxId: 9913]
d3u5cc_ : (GLY109) (TYR143) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1dmza_ : (ASN610) (ARG629) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fc7a1 : (GLY34) (CYS51) [view usage] : g.44.1.6 |RING/U-box |RING/U-box |ZZ domain |Zinc finger ZZ-type-containing protein 3, ZZZ3 |Human (Homo sapiens) [TaxId: 9606]
d2dlga1 : (CYS19) (VAL37) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d2wgqa4 : (ALA491) (ASP537) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d1ciya1 : (GLY548) (THR572) [view usage] : b.18.1.3 |Galactose-binding domain-like |Galactose-binding domain-like |delta-Endotoxin, C-terminal domain |delta-Endotoxin, C-terminal domain |Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d2azua_ : (ASN47) (SER89) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d1qfwa_ : (THR11) (CYS28) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) |Human (Homo sapiens) [TaxId: 9606]
d2lhaa_ : (LEU335) (ASP365) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
d1pt0b_ : (ILE85) (GLY111) [view usage] : b.52.2.1 |Double psi beta-barrel |ADC-like |Pyruvoyl dependent aspartate decarboxylase, ADC |Pyruvoyl dependent aspartate decarboxylase, ADC |Escherichia coli [TaxId: 562]
d2i79e_ : (VAL74) (GLY95) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2hgjg1 : (VAL38) (ARG96) [view usage] : d.77.1.1 |RL5-like |RL5-like |Ribosomal protein L5 |Ribosomal protein L5 |Thermus thermophilus [TaxId: 274]
d2nm1a1 : (ASP925) (ILE953) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d3h5qa3 : (LEU395) (ALA418) [view usage] : d.41.3.0 |alpha/beta-Hammerhead |Pyrimidine nucleoside phosphorylase C-terminal domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1fo4a3 : (ILE667) (TYR689) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Xanthine oxidase, domain 5 (?) |Cow (Bos taurus) [TaxId: 9913]
d4howa2 : (SER522) (LEU540) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Erwinia rhapontici [TaxId: 55212]
d1wzva1 : (LYS48) (PHE69) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 L6 [TaxId: 9606]
d3amza5 : (ILE667) (GLU690) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Xanthine oxidase, domain 5 (?) |Cow (Bos taurus) [TaxId: 9913]
d2nyha1 : (LEU82) (ILE104) [view usage] : d.58.55.1 |Ferredoxin-like |DOPA-like |DOPA dioxygenase-like |Putative dioxygenase BxeB0224 |Burkholderia xenovorans [TaxId: 36873]
d4rnlb_ : (SER202) (GLY246) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Streptomyces platensis [TaxId: 58346]
d4et7a_ : (ASP180) (GLY203) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2isba_ : (LYS139) (GLU159) [view usage] : c.8.9.1 |The "swivelling" beta/beta/alpha domain |FumA C-terminal domain-like |FumA C-terminal domain-like |Fumarate hydratase class I beta subunit |Archaeoglobus fulgidus [TaxId: 2234]
d1pkpa2 : (GLY44) (VAL77) [view usage] : d.50.1.2 |dsRBD-like |dsRNA-binding domain-like |Ribosomal S5 protein, N-terminal domain |Ribosomal S5 protein, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1a6ca3 : (LEU452) (ILE483) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d1epwa1 : (ASP924) (ILE952) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1qrka4 : (MET350) (TYR372) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d3hy9b_ : (LEU379) (GLU398) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1y54a_ : (GLY115) (TRP142) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Enterobacter cloacae [TaxId: 550]
d1cwpa_ : (ILE156) (GLU176) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |Cowpea chlorotic mottle virus [TaxId: 12303]
d1z0ha1 : (ASP924) (THR950) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d3ubma_ : (GLN269) (GLU293) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
d2jifa1 : (GLY215) (ASP238) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3eubc1 : (ILE667) (GLU690) [view usage] : d.41.1.0 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3m7nh1 : (VAL132) (ALA167) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 2,ECX2 |Archaeoglobus fulgidus [TaxId: 2234]
d1oz7b_ : (GLY67) (LYS100) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Snake coagglutinin beta chain |Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]
d4lmsc_ : (VAL9) (MET45) [view usage] : d.184.1.0 |Non-globular alpha+beta subunits of globular proteins |Non-globular alpha+beta subunits of globular proteins |automated matches |automated matches |Chroomonas sp. [TaxId: 3029]
d4kbba1 : (ASP925) (THR951) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1rp5a3 : (GLY232) (THR263) [view usage] : d.175.1.1 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |Penicillin-binding protein 2x (pbp-2x), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4rnld_ : (SER202) (GLY246) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Streptomyces platensis [TaxId: 58346]
d1dgja3 : (LEU282) (LEU304) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |Aldehyde oxidoreductase, domain 3 |Desulfovibrio desulfuricans [TaxId: 876]
d1mpfa_ : (ASP54) (LEU83) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1shca_ : (LEU53) (LEU115) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Shc adaptor protein |Human (Homo sapiens) [TaxId: 9606]
d2jfga2 : (GLY311) (GLY337) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3gbda2 : (THR495) (LEU513) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Protaminobacter rubrum [TaxId: 126825]
d1m53a1 : (ALA522) (LEU540) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Isomaltulose synthase PalI |Klebsiella sp., lx3 [TaxId: 576]
d1fjge2 : (GLY39) (PRO70) [view usage] : d.50.1.2 |dsRBD-like |dsRNA-binding domain-like |Ribosomal S5 protein, N-terminal domain |Ribosomal S5 protein, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3flka_ : (ASN106) (GLU135) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.3, c.123, d.58, i.1, b.29, b.30, d.92, c.77, f.4, e.6, b.18, d.169, d.14, b.121, d.3, b.6, b.1, d.108, d.20,
c.73, b.42, c.8, b.52, c.61, b.55, c.59, d.41, b.26, d.65, b.7, d.175, b.71, d.86, g.17, d.50, g.7, g.44, d.77, d.184,
g.50