Tableau information
Concept source: d3jwdc1 amino acid (a.a.) range (GLY1065)(GLU1087)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY1065) (ASN1073) E1
(LYS1075) (THR1081) H2
(THR1081) (GLU1087) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -150.0° H2
E3 156.1° -51.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zb6a1 : (GLY45) (SER66) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d1bev3_ : (HIS174) (THR200) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Bovine enterovirus coat proteins |Bovine enterovirus, VG-5-27 [TaxId: 12064]
d2ivya_ : (LEU4) (GLY39) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1qwrb_ : (SER4) (ILE41) [view usage] : b.82.1.3 |Double-stranded beta-helix |RmlC-like cupins |Type I phosphomannose isomerase |Mannose-6-phosphate isomerase ManA |Bacillus subtilis [TaxId: 1423]
d1qbaa3 : (GLU380) (HIS401) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Bacterial chitobiase (beta-N-acetylhexosaminidase) |Serratia marcescens [TaxId: 615]
d3qb4c_ : (LYS22) (CYS48) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jlma_ : (LEU74) (HIS99) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
d1zcwa_ : (GLY45) (SER66) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d1c4pc_ : (LYS156) (LEU184) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d1ydxa2 : (THR251) (GLU268) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MG438 |Mycoplasma genitalium [TaxId: 2097]
d1v5ca_ : (TRP166) (ASP183) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Chitosanase |Bacillus sp., strain k17 [TaxId: 1409]
d2j01d2 : (VAL3) (SER22) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Thermus thermophilus [TaxId: 274]
d2jlme_ : (LEU74) (HIS99) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
d3u5ez_ : (GLY39) (LYS73) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1p1da1 : (GLY38) (ASP63) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Glutamate receptor interacting protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hc9a_ : (CYS23) (GLY43) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Bungarotoxin |Many-banded krait (Bungarus multicinctus), Alpha-bungarotoxin [TaxId: 8616]
d2ds4a_ : (GLY87) (ARG111) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vsap1 : (THR32) (GLY63) [view usage] : b.155.1.1 |L21p-like |L21p-like |Ribosomal protein L21p |Ribosomal protein L21p |Thermus thermophilus [TaxId: 274]
d3v62b2 : (PRO184) (MET199) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3shia_ : (LEU181) (ASP198) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Fibroblast collagenase (MMP-1) |Human (Homo sapiens) [TaxId: 9606]
d1mmpa_ : (LEU181) (ASP198) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Matrilysin (MMP-7) |Human (Homo sapiens) [TaxId: 9606]
d3t8ja_ : (PHE258) (PHE277) [view usage] : c.70.1.0 |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d2pg0a1 : (ASP168) (ARG194) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d2diaa1 : (TYR80) (PRO102) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d4n1da_ : (HIS17) (GLU46) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3h7oa_ : (SER123) (ASP152) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Sarcoptes scabiei [TaxId: 197185]
d1c7sa3 : (GLU380) (HIS401) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Bacterial chitobiase (beta-N-acetylhexosaminidase) |Serratia marcescens [TaxId: 615]
d4h2ea_ : (LEU188) (ASP207) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d1w07a3 : (ASN219) (HIS246) [view usage] : e.6.1.2 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |acyl-CoA oxidase N-terminal domains |Acyl-coenzyme A oxidase 1, domains 1 and 2 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3soka_ : (CYS97) (GLN125) [view usage] : d.24.1.0 |Pili subunits |Pili subunits |automated matches |automated matches |Dichelobacter nodosus [TaxId: 870]
d4hnak_ : (ARG295) (LEU335) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4c8xa_ : (GLN50) (PHE69) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1hfsa_ : (LEU164) (ASP183) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
d1ylbb_ : (VAL1) (SER23) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
d2hgjd2 : (LYS5) (GLU28) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Thermus thermophilus [TaxId: 274]
d1bqqm_ : (LEU199) (ALA218) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Membrane-type matrix metalloproteinase (CDMT1-MMP) |Human (Homo sapiens) [TaxId: 9606]
d2hfva1 : (LEU26) (HIS73) [view usage] : d.58.5.5 |Ferredoxin-like |GlnB-like |RPA1041-like |Hypothetical protein RPA1041 |Rhodopseudomonas palustris [TaxId: 1076]
d1tega_ : (VAL1) (ALA22) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d1f3la_ : (ASP412) (LYS441) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Arginine methyltransferase, HMT1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1c7ta3 : (GLU380) (HIS401) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Bacterial chitobiase (beta-N-acetylhexosaminidase) |Serratia marcescens [TaxId: 615]
d2kmla_ : (MET1) (PRO33) [view usage] : c.56.1.1 |Phosphorylase/hydrolase-like |HybD-like |Hydrogenase maturating endopeptidase HybD |Hydrogenase maturating endopeptidase HybD |Escherichia coli [TaxId: 562]
d1mmra_ : (LEU181) (ASP200) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Matrilysin (MMP-7) |Human (Homo sapiens) [TaxId: 9606]
d2i0xa1 : (MET1) (GLY35) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |Hypothetical protein PF1117 |Pyrococcus furiosus [TaxId: 2261]
d2yqga_ : (PRO16) (SER36) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nz9a_ : (ASP135) (THR152) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Thermus thermophilus [TaxId: 274]
d4fu4a1 : (LEU185) (ASP204) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
d1jmjb_ : (PHE226) (GLY278) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Heparin cofactor II (Hc-II, leuserpin 2) |Human (Homo sapiens) [TaxId: 9606]
d4lftb_ : (CYS21) (GLY41) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |automated matches |Dendroaspis polylepis [TaxId: 8620]
d2i8ea1 : (LEU6) (GLY39) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |Hypothetical protein SSO1404 |Sulfolobus solfataricus [TaxId: 2287]
d4mbub_ : (LEU62) (ASP87) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, d.58, i.1, b.47, c.56, a.102, c.66, d.92, b.40, c.37, e.6, b.121, b.2, b.6, b.1, d.108, d.131, e.1, b.34,
d.287, d.15, g.17, b.36, d.24, c.70, g.7, d.313, b.155