Tableau information
Concept source: d4jeyb_ amino acid (a.a.) range (GLU100)(PHE137)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU100) (ASN106) E1
(GLY108) (SER128) H2
(THR132) (PHE137) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 136.3° H2
E3 -73.2° 136.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1x9na3 : (LEU544) (TYR567) [view usage] : d.142.2.1 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |ATP-dependent DNA ligase catalytic domain |DNA ligase I (LIG1) |Human (Homo sapiens) [TaxId: 9606]
d2hx5a1 : (LEU8) (ILE68) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical protein PMT2055 |Prochlorococcus marinus [TaxId: 1219]
d3k5la1 : (PHE193) (TRP223) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3d6nb2 : (LYS192) (ARG213) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2hura_ : (THR116) (ARG141) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Escherichia coli [TaxId: 562]
d3j3bd_ : (VAL20) (ILE64) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d3iv7a_ : (GLN14) (ALA43) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1v8ma_ : (PRO65) (ASP92) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Thermus thermophilus [TaxId: 274]
d1tzqa_ : (GLY6) (GLU40) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d2nqpd1 : (LYS11) (CYS55) [view usage] : d.265.1.1 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase I TruA |Pseudouridine synthase I TruA |Escherichia coli [TaxId: 562]
d1c5ka2 : (LYS68) (PRO107) [view usage] : c.51.2.1 |Anticodon-binding domain-like |TolB, N-terminal domain |TolB, N-terminal domain |TolB, N-terminal domain |Escherichia coli [TaxId: 562]
d2z1ma_ : (VAL54) (ASN81) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Aquifex aeolicus [TaxId: 224324]
d3dbhb_ : (GLN351) (THR384) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d3cmbd_ : (LYS30) (ALA57) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2pzha_ : (HIS0) (PHE57) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1vhza_ : (SER78) (ASN105) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d4a17w_ : (GLU6) (GLU53) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1vs6m1 : (GLN97) (VAL131) [view usage] : d.41.4.2 |alpha/beta-Hammerhead |Ribosomal protein L16p/L10e |Ribosomal protein L16p |Ribosomal protein L16p |Escherichia coli [TaxId: 562]
d1vhzb_ : (SER78) (ASN105) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d2fg6c2 : (ALA217) (ALA240) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
d3hl0a_ : (ARG12) (THR40) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2dt4a_ : (GLY9) (GLY42) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3hl0b_ : (PRO10) (THR40) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4dw8a_ : (ALA135) (ASP158) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d2fuja1 : (VAL10) (VAL58) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical protein XCC1147 |Xanthomonas campestris pv. campestris [TaxId: 340]
d3csea_ : (VAL6) (ILE53) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 5478]
d3dblb_ : (GLN351) (THR384) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d3jsla_ : (THR77) (LEU111) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Staphylococcus aureus [TaxId: 1280]
d1v9pa3 : (TYR83) (HIS117) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Thermus filiformis [TaxId: 276]
d2gova1 : (ALA42) (PRO81) [view usage] : d.60.1.4 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |SOUL heme-binding protein |Heme-binding protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d1dgsa3 : (ASP86) (HIS115) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Thermus filiformis [TaxId: 276]
d3hxab_ : (ALA33) (GLU65) [view usage] : d.74.1.1 |DCoH-like |PCD-like |PCD-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ss4b_ : (VAL12) (GLU40) [view usage] : d.32.1.6 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Hypothetical protein BC1747 |Hypothetical protein BC1747 |Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]
d1regx_ : (ILE2) (CYS36) [view usage] : d.58.27.1 |Ferredoxin-like |Translational regulator protein regA |Translational regulator protein regA |Translational regulator protein regA |Bacteriophage T4 [TaxId: 10665]
d1telb2 : (VAL2096) (ASP2139) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Chlorobium tepidum [TaxId: 1097]
d2ab4a2 : (GLY4) (GLY36) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Thermotoga maritima [TaxId: 2336]
d1j3ma_ : (GLY3) (ASP35) [view usage] : d.129.7.1 |TBP-like |TT1751-like |TT1751-like |Hypothetical protein TT1751 (TTHA1732) |Thermus thermophilus HB8 [TaxId: 300852]
d1r4xa2 : (GLU784) (GLU814) [view usage] : d.105.1.2 |Subdomain of clathrin and coatomer appendage domain |Subdomain of clathrin and coatomer appendage domain |Coatomer appendage domain |Coatomer gamma subunit, C-terminal subdomain |Human (Homo sapiens) [TaxId: 9606]
d3jsta_ : (ALA29) (GLU61) [view usage] : d.74.1.0 |DCoH-like |PCD-like |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d1yemb_ : (VAL3) (GLU37) [view usage] : d.63.1.2 |CYTH-like phosphatases |CYTH-like phosphatases |CYTH domain |Hypothetical protein PF0863 |Pyrococcus furiosus [TaxId: 2261]
d2fz6c_ : (ASP30) (CYS57) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |Hypocrea jecorina [TaxId: 51453]
d1u2ca2 : (ASP183) (PRO227) [view usage] : d.272.1.1 |Dystroglycan, domain 2 |Dystroglycan, domain 2 |Dystroglycan, domain 2 |Dystroglycan, domain 2 |Mouse (Mus musculus) [TaxId: 10090]
d1cjxa2 : (LEU162) (ARG188) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |4-hydroxyphenylpyruvate dioxygenase, HppD |Pseudomonas fluorescens [TaxId: 294]
d1y8xb1 : (GLN351) (THR384) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d4ifsa_ : (LYS304) (PRO329) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fdea_ : (GLY432) (GLY469) [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
d1js1y2 : (ALA217) (ASN237) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
d3u5id_ : (VAL7) (ALA52) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1nf9a_ : (ASP117) (LEU147) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Phenazine biosynthesis protein PhzD |Pseudomonas aeruginosa [TaxId: 287]
d1vhga_ : (SER78) (ASN105) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP compounds hydrolase NudE |Escherichia coli [TaxId: 562]
d2eyqa2 : (GLY354) (GLU390) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1ia0a_ : (ALA265) (ALA314) [view usage] : i.10.1.1 |Microtubule complexes |Microtubule complexes |Microtubule complexes |Kif1a head-microtubule complex |interspecies complex: Mus musculus and Sus scrofa
d1s07b_ : (CYS105) (PHE140) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d3pena1 : (ASN11) (SER35) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3jstb_ : (ALA29) (GLU61) [view usage] : d.74.1.0 |DCoH-like |PCD-like |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d3fn1a_ : (GLN351) (THR384) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2w8ba1 : (LYS67) (PRO106) [view usage] : c.51.2.0 |Anticodon-binding domain-like |TolB, N-terminal domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1ahua2 : (ALA73) (ILE102) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |Vanillyl-alcohol oxidase |Fungus (Penicillium simplicissimum) [TaxId: 69488]
d1dj0a_ : (PRO7) (CYS55) [view usage] : d.265.1.1 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase I TruA |Pseudouridine synthase I TruA |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.2, d.58, i.1, c.108, e.22, d.129, c.37, c.55, c.71, d.32, b.122, c.78, d.347, d.38, c.51, c.33, c.111, b.55, d.142,
d.41, d.145, b.97, i.10, d.63, d.74, d.113, d.105, d.290, d.265, b.138, d.60, d.272