Tableau information
Concept source: d4hwra1 amino acid (a.a.) range (GLY262)(LYS294)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY262) (HIS267) E1
(HIS267) (GLU287) H2
(GLN289) (LYS294) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -102.5° H2
E3 -97.5° 139.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2d1pe_ : (GLU97) (PHE119) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein C, TusC |Escherichia coli [TaxId: 562]
d1zcea1 : (SER121) (PRO146) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |Hypothetical protein Atu2648 |Agrobacterium tumefaciens [TaxId: 358]
d4fila_ : (GLY224) (THR244) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3c9xa_ : (ASN205) (ASP249) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d2reqa1 : (GLY140) (MET167) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1eqka_ : (VAL12) (LYS46) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Phytocystatin |Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]
d1c4pc_ : (ASP192) (GLU218) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d1xdna_ : (ILE59) (GLU86) [view usage] : d.142.2.4 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |RNA ligase |RNA editing ligase MP52 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2ykma1 : (ALA360) (LEU391) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d3meda1 : (ALA360) (LEU391) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d3kmpb_ : (LYS118) (SER132) [view usage] : d.164.1.1 |SMAD MH1 domain |SMAD MH1 domain |SMAD MH1 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qi5a2 : (ALA161) (PHE194) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) |Pseudomonas stutzeri [TaxId: 316]
d2h1ta1 : (ASP101) (GLU127) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d2hy5c1 : (GLY479) (LEU502) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |DsrH |Chromatium vinosum [TaxId: 1049]
d4lh7a_ : (ASN90) (GLY123) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1vdmg_ : (LYS3) (ALA34) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Pprobable purine phosphoribosyltransferase PH0095 |Pyrococcus horikoshii [TaxId: 53953]
d1c50a_ : (ASN284) (LEU337) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1iu4a_ : (ALA287) (PRO316) [view usage] : d.3.1.8 |Cysteine proteinases |Cysteine proteinases |Microbial transglutaminase |Microbial transglutaminase |Streptoverticillium mobaraense [TaxId: 35621]
d2d1pb1 : (GLU97) (PHE119) [view usage] : c.114.1.1 |DsrEFH-like |DsrEFH-like |DsrEF-like |tRNA 2-thiouridine synthesizing protein C, TusC |Escherichia coli [TaxId: 562]
d1nhkr_ : (THR115) (PRO142) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Myxococcus xanthus [TaxId: 34]
d3fhcb_ : (ALA275) (LYS298) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sr8a_ : (GLY188) (THR215) [view usage] : e.54.1.1 |CbiD-like |CbiD-like |CbiD-like |Cobalamin biosynthesis protein CbiD |Archaeoglobus fulgidus [TaxId: 2234]
d2h1tb_ : (LEU100) (GLU127) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d1nhkl_ : (THR115) (PRO142) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Myxococcus xanthus [TaxId: 34]
d4jcma1 : (LEU188) (ALA221) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus clarkii [TaxId: 79879]
d1bnda_ : (ASP14) (SER32) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |Brain-derived neurotrophic factor, BDNF |Human (Homo sapiens) [TaxId: 9606]
d2pora_ : (ALA194) (ALA222) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodobacter capsulatus [TaxId: 1061]
d1gwja_ : (SER151) (ALA187) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Morphinone reductase |Pseudomonas putida [TaxId: 303]
d1pc3a_ : (GLY248) (ASP279) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
d1z5ga1 : (HIS24) (ASP46) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d2ap9a1 : (PHE92) (ILE129) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d2r7ab_ : (GLN200) (THR220) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d1xhsa_ : (HIS52) (GLN82) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein YtfP |Escherichia coli [TaxId: 562]
d1adea_ : (ARG303) (LYS331) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1a90a_ : (ALA10) (ARG46) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin |Chicken (Gallus gallus) [TaxId: 9031]
d4hwra1 : (GLY262) (LYS294) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2ynga1 : (ALA360) (LEU391) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d1u25c_ : (GLN189) (ALA209) [view usage] : c.45.1.4 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Selenomonas ruminantium [TaxId: 971]
d2diea1 : (TYR203) (ALA237) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus sp.
d1bwla_ : (ASN155) (ALA193) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Yeast (Candida albicans) [TaxId: 5476]
d2r7aa_ : (LYS202) (THR220) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d4lzia1 : (GLY7) (VAL41) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d2d1pc1 : (ASP73) (TRP95) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |tRNA 2-thiouridine synthesizing protein B, TusB |Escherichia coli [TaxId: 562]
d4lh6a_ : (ASN90) (GLY123) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.94, d.58, c.108, c.92, c.45, b.50, f.4, c.37, d.104, d.3, c.87, b.122, c.73, d.17, c.61, d.142, d.15, g.17,
b.178, c.114, e.54, d.164, d.269