Tableau information
Concept source: d1czha_ amino acid (a.a.) range (LYS2)(ASP35)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS2) (GLY8) E1
(GLY12) (GLY26) H2
(ILE30) (ASP35) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 164.7° H2
E3 -22.9° -171.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ydga_ : (LYS6) (LYS40) [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
d1mosa_ : (HIS465) (ALA498) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |"Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) |Escherichia coli [TaxId: 562]
d2zska1 : (LYS3) (ASN44) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1gpwd_ : (MET1) (LEU34) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermotoga maritima [TaxId: 2336]
d4pbqa_ : (LYS25) (ASN67) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Haemophilus influenzae [TaxId: 656912]
d3tnla1 : (THR13) (ALA47) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d2veia_ : (PRO6) (THR44) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1cm7b_ : (ASN4) (HIS42) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Escherichia coli [TaxId: 562]
d1t1ja_ : (LYS3) (VAL43) [view usage] : c.23.14.2 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |Hypothetical protein PA1492 |Hypothetical protein PA1492 |Pseudomonas aeruginosa [TaxId: 287]
d1jl3a_ : (ASN3) (ALA37) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Bacillus subtilis [TaxId: 1423]
d4p8ba_ : (TYR33) (LEU68) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d2xvza_ : (HIS81) (LEU119) [view usage] : c.92.1.0 |Chelatase-like |Chelatase |automated matches |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d3udub_ : (LYS5) (GLU41) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Campylobacter jejuni [TaxId: 197]
d1ofua1 : (GLU39) (GLY62) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Cell-division protein FtsZ |Pseudomonas aeruginosa [TaxId: 287]
d1jfva_ : (THR5) (ILE39) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Staphylococcus aureus [TaxId: 1280]
d2btma_ : (PRO3) (PRO42) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Bacillus stearothermophilus [TaxId: 1422]
d4wuia_ : (VAL78) (THR104) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Jonesia denitrificans [TaxId: 471856]
d1dtza1 : (VAL6) (LYS38) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Camel (Camelus dromedarius) [TaxId: 9838]
d1o9ba2 : (TYR7) (ALA41) [view usage] : c.58.1.5 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Shikimate dehydrogenase-like |Putative shikimate dehydrogenase YdiB |Escherichia coli [TaxId: 562]
d1ig0a2 : (SER185) (PRO223) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2wsqa_ : (ILE7) (SER44) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4bi7a_ : (PRO6) (SER44) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Giardia intestinalis [TaxId: 5741]
d1lu9a2 : (ALA62) (ASP95) [view usage] : c.58.1.4 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Methylene-tetrahydromethanopterin dehydrogenase |Methylene-tetrahydromethanopterin dehydrogenase |Methylobacterium extorquens [TaxId: 408]
d1suxa_ : (PRO7) (THR45) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosoma cruzi [TaxId: 5693]
d3exea_ : (ILE220) (GLN256) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d3k9eb_ : (PRO51) (LEU86) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Escherichia coli [TaxId: 217992]
d2uyea_ : (ARG97) (ARG132) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia cepacia [TaxId: 292]
d3oojf2 : (HIS294) (ILE326) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d4mcoc_ : (LEU30) (ILE70) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Rhodoferax ferrireducens [TaxId: 338969]
d2wsra_ : (PRO4) (ARG44) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1kdra_ : (VAL7) (GLY37) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
d2c00a1 : (GLU3) (SER33) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3t4eb1 : (TYR7) (ALA41) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d4eh1b2 : (ASP204) (PHE236) [view usage] : c.25.1.0 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1ig0b2 : (SER185) (PRO223) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2nyha1 : (SER11) (GLU48) [view usage] : d.58.55.1 |Ferredoxin-like |DOPA-like |DOPA dioxygenase-like |Putative dioxygenase BxeB0224 |Burkholderia xenovorans [TaxId: 36873]
d1ni4a_ : (ILE220) (GLN256) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d4rjza_ : (VAL29) (PHE66) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d4jeqa_ : (PRO6) (THR44) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1w93a2 : (SER60) (PRO100) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Acetyl-CoA carboxylase, BC-N subdomain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ks9a2 : (GLY135) (ASN167) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d3uorb_ : (THR28) (PRO64) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d3ppoa_ : (ILE34) (LYS67) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4o8ma_ : (THR27) (LEU64) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d4o8mg_ : (THR27) (LEU64) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1x60a_ : (ILE50) (LEU77) [view usage] : d.58.52.0 |Ferredoxin-like |Sporulation related repeat |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1moqa_ : (HIS465) (ALA498) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |"Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) |Escherichia coli [TaxId: 562]
d1kxja_ : (MET1) (LEU34) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermotoga maritima [TaxId: 2336]
d1kxjb_ : (MET1) (LEU34) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermotoga maritima [TaxId: 2336]
d2m1za_ : (MET1) (GLY42) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1gvha3 : (MET357) (PHE390) [view usage] : c.25.1.5 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Flavohemoglobin, C-terminal domain |Flavohemoglobin, C-terminal domain |Escherichia coli [TaxId: 562]
d2cb0b_ : (ARG33) (PRO64) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1umba_ : (ILE230) (ARG266) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Branched-chain alpha-keto acid dehydrogenase, PP module |Thermus thermophilus [TaxId: 274]
d3v4za1 : (LYS4) (ASP41) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1ns5b_ : (LYS2) (PRO39) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |Hypothetical protein YbeA |Escherichia coli [TaxId: 562]
d2zzxb_ : (ARG1033) (PRO1073) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4pf8a_ : (ASP26) (HIS64) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfitobacter sp. [TaxId: 314267]
d3tozb1 : (THR13) (ALA47) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1azya2 : (ILE81) (GLY118) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Thymidine phosphorylase |Escherichia coli [TaxId: 562]
d4mcoa_ : (LEU30) (GLY73) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Rhodoferax ferrireducens [TaxId: 338969]
d1p4sa_ : (MET1) (GLY32) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d4o8md_ : (THR27) (LEU64) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d2ozla1 : (ILE220) (GLN256) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d3h5qa2 : (LYS78) (GLY113) [view usage] : c.27.1.0 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1sqsa_ : (LYS3) (PRO41) [view usage] : c.23.5.5 |Flavodoxin-like |Flavoproteins |Hypothetical protein SP1951 |Hypothetical protein SP1951 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2dp3a_ : (PRO6) (SER44) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Giardia intestinalis [TaxId: 5741]
d1us5a_ : (GLU19) (SER56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d1wpwa_ : (THR3) (GLU39) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Sulfolobus tokodaii [TaxId: 111955]
d4pgpb_ : (PRO32) (GLY73) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d1gzhd2 : (LYS1873) (HIS1904) [view usage] : c.15.1.4 |BRCT domain |BRCT domain |53BP1 |53BP1 |Human (Homo sapiens) [TaxId: 9606]
d4mcob_ : (LEU30) (ILE70) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Rhodoferax ferrireducens [TaxId: 338969]
d3t4ea1 : (TYR7) (ALA41) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d3k7oa_ : (THR2) (TYR35) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d1gpwb_ : (MET1) (LEU34) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermotoga maritima [TaxId: 2336]
d2ozlc_ : (ILE220) (GLN256) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d1us4a_ : (GLU19) (SER56) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d1evya2 : (ASN16) (VAL43) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Glycerol-3- phosphate dehydrogenase |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1yrha1 : (LYS6) (LYS40) [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
d2vdca2 : (ASN724) (ILE746) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Alpha subunit of glutamate synthase, central and FMN domains |Azospirillum brasilense [TaxId: 192]
d1nn4d_ : (ALA5) (GLY34) [view usage] : c.121.1.1 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Alternate ribose 5-phosphate isomerase B, RpiB |Escherichia coli [TaxId: 562]
d1t1jb_ : (HIS0) (VAL43) [view usage] : c.23.14.2 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |Hypothetical protein PA1492 |Hypothetical protein PA1492 |Pseudomonas aeruginosa [TaxId: 287]
d3js5a_ : (MET1) (GLY40) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d1i7la1 : (LYS115) (GLU148) [view usage] : c.30.1.5 |PreATP-grasp domain |PreATP-grasp domain |Synapsin domain |Synapsin II |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, d.58, c.92, c.80, c.77, c.72, c.23, c.37, c.36, c.32, c.78, c.25, c.116, c.121, c.30, c.58, c.27, c.44,
c.15, c.100