Tableau information
Concept source: d1f3dk2 amino acid (a.a.) range (TYR183)(ALA209)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR183) (THR190) E1
(SER193) (GLU199) H2
(GLU199) (ALA209) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 116.4° H2
E3 156.1° -72.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (THR324) (GLN360) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d3sz6a_ : (LYS71) (GLU90) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1ecya_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d3urfa_ : (GLU288) (LYS312) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a8ma_ : (ASP130) (LEU157) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d2d3qa1 : (THR324) (GLN360) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Geotrichum candidum [TaxId: 27317]
d3o1ka_ : (LYS15) (ALA47) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1sera2 : (PRO245) (THR284) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Seryl-tRNA synthetase (SerRS) |Thermus thermophilus, strain hb27 [TaxId: 274]
d1ae6h1 : (THR77) (ARG94) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d2j61a_ : (PHE120) (ASN152) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sika_ : (LYS71) (GLU90) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1rxla_ : (GLU1) (GLY34) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d3ii6a1 : (MET1) (TRP24) [view usage] : b.59.1.1 |XRCC4, N-terminal domain |XRCC4, N-terminal domain |XRCC4, N-terminal domain |XRCC4, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1kohc2 : (LYS117) (GLU164) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1sqlb_ : (LEU4) (TRP35) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2pi0c_ : (GLY89) (PHE109) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d2zgua_ : (ILE25) (GLU52) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d1vjoa_ : (THR316) (MSE360) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Alanine-glyoxylate aminotransferase |Nostoc sp. PCC 7120 [TaxId: 103690]
d2rfwa_ : (ARG39) (ALA74) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d1azzc_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d4bgdc_ : (ILE2345) (TYR2376) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1re3b1 : (ILE252) (GLY295) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1xxfc_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1xx9c_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1wxoa_ : (ILE72) (ILE108) [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
d3mm1a_ : (THR324) (GLN360) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d3o1kb_ : (LYS15) (ALA47) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1fida_ : (PHE194) (ASN230) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), gamma [TaxId: 9606]
d1txga2 : (THR132) (SER156) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Glycerol-3- phosphate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d3a2fb2 : (THR131) (GLU161) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Pyrococcus furiosus [TaxId: 2261]
d4e4gf_ : (ALA343) (ASP370) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4poqf_ : (GLU161) (ASP202) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |automated matches |Human polyomavirus 9 [TaxId: 943908]
d1id5i_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1tnfa_ : (GLY129) (ALA156) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d2ixqb1 : (CYS3) (GLY34) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d1ow0a2 : (THR409) (HIS436) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha |Human (Homo sapiens) [TaxId: 9606]
d1p0se_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d4mj0a_ : (PRO158) (LEU197) [view usage] : b.121.6.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |automated matches |automated matches |Bk polyomavirus [TaxId: 10629]
d2a1va1 : (PRO56) (THR94) [view usage] : d.198.3.1 |Secretion chaperone-like |YjbR-like |YjbR-like |Hypothetical protein DR2400 |Deinococcus radiodurans [TaxId: 1299]
d3cu7a3 : (PHE227) (ARG253) [view usage] : b.1.29.4 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG3-like |Complement C5 MG3 |Human (Homo sapiens) [TaxId: 9606]
d4niye_ : (LYS21) (GLY43) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Escherichia coli K-12 [TaxId: 83333]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.2, d.58, b.29, c.82, d.104, d.171, b.121, b.2, d.96, b.1, c.97, d.131, b.22, a.4, d.67, d.198, b.16, b.59