Tableau information
Concept source: d4mf7a1 amino acid (a.a.) range (GLU46)(ASP76)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU46) (ASP51) E1
(THR59) (ASN66) H2
(ILE71) (ASP76) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -121.0° H2
E3 157.1° 70.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4uy2c_ : (CYS23) (GLY43) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Bungarotoxin |Many-banded krait (Bungarus multicinctus), Alpha-bungarotoxin [TaxId: 8616]
d2rcfd_ : (VAL50) (GLY75) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carboxysome shell protein |Thiobacillus neapolitanus [TaxId: 927]
d1wgka_ : (ALA10) (PRO37) [view usage] : d.15.3.3 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |C9orf74 homolog |C9orf74 homolog |Mouse (Mus musculus) [TaxId: 10090]
d4a17v_ : (LYS79) (PHE113) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4gxha_ : (ILE4) (PHE33) [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Xenorhabdus bovienii [TaxId: 406818]
d1bxya_ : (PRO2) (VAL36) [view usage] : d.59.1.1 |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Prokaryotic ribosomal protein L30 |Thermus thermophilus [TaxId: 274]
d1r11a3 : (ASP5) (HIS31) [view usage] : d.75.1.1 |MutS N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |Dimeric tRNA splicing endonuclease, domains 1 and 3 |Archaeoglobus fulgidus [TaxId: 2234]
d2wc1a_ : (PHE50) (GLY89) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d1vs6y1 : (LYS5) (GLU38) [view usage] : d.59.1.1 |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Prokaryotic ribosomal protein L30 |Escherichia coli [TaxId: 562]
d2ahjd_ : (GLY175) (ASP202) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d4jvzc_ : (LEU56) (ALA80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Thermosynechococcus elongatus [TaxId: 197221]
d1vjka_ : (SER1) (PRO26) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Pyrococcus furiosus [TaxId: 2261]
d1e44a_ : (ASN45) (ASP81) [view usage] : d.26.2.1 |FKBP-like |Colicin E3 immunity protein |Colicin E3 immunity protein |Colicin E3 immunity protein |Escherichia coli [TaxId: 562]
d2ax5a_ : (MET1) (LYS28) [view usage] : d.15.3.0 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ebaa_ : (VAL76) (VAL98) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d3biid_ : (ILE2) (ALA22) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d2z9ha_ : (LEU56) (GLY80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d2hd3d_ : (VAL55) (GLY80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d2b67a1 : (ILE148) (GLY180) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Hypothetical oxidoreductase SP0622 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ywhm3 : (GLY191) (GLY217) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d2m4na_ : (GLY5) (LEU24) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2k9xa_ : (ILE7) (GLY29) [view usage] : d.15.3.0 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1xebg_ : (LEU3) (ALA54) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA0115 |Pseudomonas aeruginosa [TaxId: 287]
d1l7la_ : (ALA1) (SER17) [view usage] : b.18.1.16 |Galactose-binding domain-like |Galactose-binding domain-like |PA-IL, galactose-binding lectin 1 |PA-IL, galactose-binding lectin 1 |Pseudomonas aeruginosa [TaxId: 287]
d4ee8a_ : (SER47) (THR64) [view usage] : d.313.1.0 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |automated matches |automated matches |Streptomyces cinnamonensis [TaxId: 1900]
d19hca_ : (TYR179) (THR196) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d3orhd_ : (ILE207) (GLY236) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d2hdba1 : (ALA138) (SER164) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |3-hydroxy-3-methylglutaryl CoA synthase MvaS |Enterococcus faecalis [TaxId: 1351]
d3orhb_ : (ILE207) (GLY236) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1rlva3 : (ASP5) (HIS31) [view usage] : d.75.1.1 |MutS N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |Dimeric tRNA splicing endonuclease, domains 1 and 3 |Archaeoglobus fulgidus [TaxId: 2234]
d3gbhb_ : (TYR158) (LYS192) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d3u5ef_ : (LYS82) (PHE116) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3bwka_ : (GLY153) (GLY189) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3lg3a_ : (ASP240) (ARG267) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Yersinia pestis [TaxId: 632]
d2hayd_ : (ILE161) (GLY198) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d1v8ca1 : (PRO1) (LEU20) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |MoaD-related protein, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3h3ba1 : (GLY130) (ASN165) [view usage] : c.10.2.5 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |L domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hd3b_ : (VAL55) (GLY80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d1pmia_ : (PHE7) (GLY52) [view usage] : b.82.1.3 |Double-stranded beta-helix |RmlC-like cupins |Type I phosphomannose isomerase |Phosphomannose isomerase |Yeast (Candida albicans) [TaxId: 5476]
d3orha_ : (ILE207) (GLY236) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1fm0d_ : (ILE2) (ALA22) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d1ewqa4 : (TYR40) (PRO74) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Thermus aquaticus [TaxId: 271]
d2k7sa_ : (GLU84) (THR109) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ahjb_ : (GLY175) (ASP202) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d1vw4u_ : (VAL2) (LYS38) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1ai2a_ : (GLY162) (CYS201) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |Isocitrate dehydrogenase, ICDH |Escherichia coli [TaxId: 562]
d3f7ma_ : (ILE104) (ASP130) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Lecanicillium psalliotae [TaxId: 73499]
d1fq4a_ : (PHE151) (GLY168) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d1t5oa_ : (GLY11) (ASN31) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Putative eIF-2B delta-subunit |Archaeoglobus fulgidus [TaxId: 2234]
d1jwbd_ : (ILE2) (ALA22) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d2d4va_ : (GLY162) (VAL201) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Acidithiobacillus thiooxidans [TaxId: 930]
d3v4xb1 : (ALA138) (SER164) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |3-hydroxy-3-methylglutaryl CoA synthase MvaS |Enterococcus faecalis [TaxId: 1351]
d1wxaa1 : (GLY10) (LEU29) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Afadin |Mouse (Mus musculus) [TaxId: 10090]
d4jvzb_ : (VAL55) (ALA80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Thermosynechococcus elongatus [TaxId: 197221]
d1nvid_ : (LYS3) (ALA22) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d2rcfb_ : (LEU51) (TRP80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carboxysome shell protein |Thiobacillus neapolitanus [TaxId: 927]
d4v193_ : (LYS65) (LYS101) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3sh1a_ : (MET126) (LYS143) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d4gxhb_ : (ILE4) (PHE33) [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Xenorhabdus bovienii [TaxId: 406818]
d1xeba_ : (LEU3) (ALA54) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA0115 |Pseudomonas aeruginosa [TaxId: 287]
d1xcja_ : (ILE206) (LYS234) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4e5gd_ : (ARG75) (LEU109) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d2z9hb_ : (VAL55) (GLY80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d2hd3a1 : (LEU56) (GLY80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d3a8mb_ : (GLY175) (ASP202) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d4p82a_ : (SER159) (ASN180) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |automated matches |Bacillus subtilis [TaxId: 224308]
d3f7oa_ : (ALA1) (ASP28) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Paecilomyces lilacinus [TaxId: 33203]
d1dlma_ : (VAL263) (ARG294) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Catechol 1,2-dioxygenase |Acinetobacter calcoaceticus [TaxId: 471]
d4gdkd_ : (LYS54) (GLU76) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1suwa_ : (GLY146) (PRO178) [view usage] : e.52.1.1 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |NAD kinase-like |Inorganic polyphosphate/ATP-NAD kinase PpnK |Archaeoglobus fulgidus [TaxId: 2234]
d2b67b_ : (ILE148) (GLY180) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Hypothetical oxidoreductase SP0622 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2hayb_ : (ILE161) (GLY198) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d2rcfa1 : (LEU51) (TRP80) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carboxysome shell protein |Thiobacillus neapolitanus [TaxId: 927]
d1ujzb_ : (PRO450) (LYS490) [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
d2h4ud_ : (THR10) (VAL31) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein Them2 |Human (Homo sapiens) [TaxId: 9606]
d4im7a1 : (ARG225) (CYS252) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 199310]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.82, c.2, i.1, c.56, c.66, c.77, c.124, b.50, c.23, b.40, c.47, c.95, b.18, d.3, b.1, d.108, d.110, b.96,
c.41, d.38, c.61, c.52, b.34, d.90, a.138, d.15, b.3, d.26, d.4, e.52, g.7, d.313, d.75, d.59