Tableau information
Concept source: d2gjaa_ amino acid (a.a.) range (PRO265)(ASP304)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO265) (THR271) E1
(GLU280) (GLU294) H2
(ARG298) (ASP304) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -145.2° H2
E3 -44.6° -135.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2b1ma_ : (TYR111) (SER141) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Pachyrhizus erosus [TaxId: 109171]
d1y5yb_ : (VAL1020) (LEU1053) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d1iola_ : (MET147) (PRO187) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Human estrogenic 17beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1vtmp_ : (GLY137) (THR154) [view usage] : a.24.5.1 |Four-helical up-and-down bundle |TMV-like viral coat proteins |TMV-like viral coat proteins |Tobacco mosaic virus coat protein |Tobacco mosaic virus, vulgare strain [TaxId: 12242]
d2zs7a_ : (ASP196) (VAL224) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1t5la1 : (VAL158) (ILE186) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Nucleotide excision repair enzyme UvrB |Bacillus caldotenax [TaxId: 1395]
d1ei7a_ : (GLY137) (SER154) [view usage] : a.24.5.1 |Four-helical up-and-down bundle |TMV-like viral coat proteins |TMV-like viral coat proteins |Tobacco mosaic virus coat protein |Tobacco mosaic virus, vulgare strain [TaxId: 12242]
d3s3qa_ : (LYS219) (GLU249) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1yfja1 : (PHE207) (ASN236) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d3akca_ : (PHE121) (SER145) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1un9a4 : (GLY302) (PRO332) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d3qsda_ : (LYS219) (GLU249) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1nmua_ : (PRO123) (LEU147) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1lqtb1 : (GLN192) (ASP226) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Ferredoxin:NADP reductase FprA |Mycobacterium tuberculosis [TaxId: 1773]
d1ixsb2 : (THR140) (TYR167) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d3ayxb_ : (ASN84) (GLY119) [view usage] : e.19.1.0 |HydA/Nqo6-like |HydA/Nqo6-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
d1siza_ : (GLU38) (ALA66) [view usage] : d.58.1.4 |Ferredoxin-like |4Fe-4S ferredoxins |Single 4Fe-4S cluster ferredoxin |Fe3S4-ferredoxin PF1909 |Pyrococcus furiosus [TaxId: 2261]
d1qdlb_ : (PRO79) (ARG100) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Anthranilate synthase GAT subunit, TrpG |Sulfolobus solfataricus [TaxId: 2287]
d3n76a_ : (LYS46) (GLY78) [view usage] : c.23.13.1 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3rgws_ : (ASN78) (GLY113) [view usage] : e.19.1.0 |HydA/Nqo6-like |HydA/Nqo6-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d3ayxd_ : (ASN84) (GLY119) [view usage] : e.19.1.0 |HydA/Nqo6-like |HydA/Nqo6-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
d4ixna1 : (ALA5) (ASN38) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein YjiA, N-terminal domain |Escherichia coli [TaxId: 562]
d1fjgj_ : (VAL72) (LYS99) [view usage] : d.58.15.1 |Ferredoxin-like |Ribosomal protein S10 |Ribosomal protein S10 |Ribosomal protein S10 |Thermus thermophilus [TaxId: 274]
d1r6za2 : (PRO122) (ASN149) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1x3la_ : (ARG90) (ILE129) [view usage] : c.118.1.0 |GckA/TtuD-like |GckA/TtuD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1un8a4 : (GLY302) (PRO332) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d1r6zz2 : (PRO122) (ASN149) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d3mueb_ : (MET1) (THR29) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Salmonella typhimurium [TaxId: 99287]
d4ixma1 : (ALA5) (ASN38) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein YjiA, N-terminal domain |Escherichia coli [TaxId: 562]
d1wdea_ : (VAL8) (SER40) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Aeropyrum pernix [TaxId: 56636]
d2awwa_ : (SER376) (THR406) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2h2ca_ : (GLY80) (GLY111) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dpea_ : (LYS1) (GLY42) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1rzma_ : (HIS293) (ASN338) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Thermotoga maritima [TaxId: 2336]
d1mv5a_ : (THR531) (GLU552) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Multidrug resistance ABC transporter LmrA, C-terminal domain |Lactococcus lactis [TaxId: 1358]
d2b0ca1 : (VAL88) (ASN115) [view usage] : c.108.1.2 |HAD-like |HAD-like |YihX-like |Putative phosphatase YihX |Escherichia coli [TaxId: 562]
d1pbaa_ : (SER50) (LEU78) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase B |Pig (Sus scrofa) [TaxId: 9823]
d3k80a_ : (GLY102) (GLN116) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1t95a3 : (GLU168) (ARG196) [view usage] : d.58.11.3 |Ferredoxin-like |EF-G C-terminal domain-like |Hypothetical protein AF0491, C-terminal domain |Hypothetical protein AF0491, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d3fdja_ : (ASN30) (PRO60) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Eubacterium eligens [TaxId: 39485]
d1lshb_ : (PRO1447) (PRO1487) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d1s9hb_ : (ASN328) (ASN358) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d4iwhb_ : (ASP61) (ALA102) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1yg6n_ : (ARG170) (HIS191) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |automated matches |Escherichia coli [TaxId: 562]
d1k7ja_ : (GLN3) (ASP35) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein YciO |Escherichia coli [TaxId: 562]
d1hqca2 : (THR140) (TYR167) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1us5a_ : (ASP182) (VAL209) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d1ep7a_ : (SER3) (PHE31) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2z2lc1 : (SER634) (GLY664) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2kl2a_ : (ALA2) (PHE30) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein LOC223267 |Mouse (Mus musculus) [TaxId: 10090]
d1mkzb_ : (GLN71) (GLY101) [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Escherichia coli [TaxId: 562]
d1us4a_ : (ASP182) (VAL209) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d1nija1 : (ALA5) (ASN38) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein YjiA, N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, d.58, c.108, c.90, c.26, c.66, c.77, c.14, c.23, c.37, c.47, d.14, d.3, c.57, b.1, c.3, e.19, a.24,
c.119, b.36, f.7, c.118, d.11, d.115, d.269