Tableau information
Concept source: d1bxga1 amino acid (a.a.) range (SER255)(PRO283)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER255) (ALA260) E1
(ASP267) (GLY278) H2
(ILE279) (PRO283) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -135.9° H2
E3 -23.4° -131.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2c4na1 : (ASP112) (THR143) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |NagD |Escherichia coli [TaxId: 562]
d4g9ja_ : (SER85) (ARG122) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s1iv_ : (VAL122) (ILE147) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4nfra_ : (GLN12) (PHE51) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b0ha4 : (VAL475) (GLY498) [view usage] : d.134.1.0 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1xnea_ : (LYS2) (ARG26) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |Hypothetical protein PF0470 |Pyrococcus furiosus [TaxId: 2261]
d1j6ua1 : (ASP61) (ASN88) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d1su1a_ : (LYS98) (HIS127) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Phosphodiesterase yfcE |Escherichia coli [TaxId: 562]
d2ii6a_ : (PRO194) (LYS224) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d3oz7b_ : (ASP158) (SER185) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3rotb_ : (PRO238) (GLN264) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d1dhja_ : (LYS38) (SER63) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d2eyqa3 : (GLY724) (ALA756) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1noia_ : (GLY685) (GLY712) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1tcoa_ : (VAL21) (GLU57) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Cow (Bos taurus) [TaxId: 9913]
d1sqwa1 : (TYR95) (SER135) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Nip7p homolog, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3zpca2 : (PRO224) (MET251) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1rhxa_ : (ASP26) (ILE51) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |Hypothetical protein TM0979 |Thermotoga maritima [TaxId: 2336]
d3epra_ : (ALA115) (ASN147) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |automated matches |Streptococcus agalactiae [TaxId: 216466]
d3nh5a_ : (ARG13) (LEU52) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1cdda_ : (ASP81) (PRO109) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Escherichia coli [TaxId: 562]
d2dt8a_ : (ARG2) (LEU32) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1c50a_ : (ALA686) (GLY712) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1idka_ : (THR21) (LYS47) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type A [TaxId: 5061]
d1gk2a_ : (THR1) (ASP28) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d2ozkc1 : (LEU119) (GLU145) [view usage] : c.66.1.48 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Nsp15 N-terminal domain-like |Nsp15 |SARS coronavirus [TaxId: 227859]
d1tvca1 : (GLY74) (GLY106) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Methane monooxygenase component C, MmoC |Methylococcus capsulatus [TaxId: 414]
d4b8za_ : (MET8) (VAL41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mf8a_ : (VAL21) (GLU57) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d1j7xa_ : (GLY205) (GLY235) [view usage] : c.14.1.2 |ClpP/crotonase |ClpP/crotonase |Tail specific protease, catalytic domain |Interphotoreceptor retinoid-binding protein IRBP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1ah2a_ : (LEU146) (ALA173) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Serine protease PB92 (subtilisin PB92) |Bacillus alcalophilus [TaxId: 1445]
d1s95a_ : (PRO265) (ARG301) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Serine/threonine protein phosphatase 5, PP5 |Human (Homo sapiens) [TaxId: 9606]
d2ofoa1 : (THR189) (ARG229) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d4i5nf_ : (THR78) (ARG115) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha |Human (Homo sapiens) [TaxId: 9606]
d1ddra_ : (LYS38) (SER63) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1it6a_ : (SER85) (ARG122) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Human (Homo sapiens), beta isoform [TaxId: 9606]
d3j3ba_ : (GLN120) (LEU146) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d2jdxa_ : (GLU178) (PRO214) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d4a17k_ : (GLN121) (LEU147) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1oh1a_ : (PHE6) (LEU45) [view usage] : b.61.2.2 |Streptavidin-like |beta-Barrel protease inhibitors |Staphostatin |Staphostatin A (SAV1910, SA1726) |Staphylococcus aureus [TaxId: 1280]
d3nrrb1 : (ASN61) (SER89) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Babesia bovis [TaxId: 5865]
d1q7ha1 : (ASN71) (SER111) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Hypothetical protein Ta1423, C-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d2ek3a_ : (VAL2) (TYR35) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d1juva_ : (THR47) (CYS72) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Bacteriophage T4 [TaxId: 10665]
d4bl5a_ : (ARG9) (VAL41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s4ya1 : (ASN16) (ASP46) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1t5ya1 : (TYR95) (SER135) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Nip7p homolog, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2cbna1 : (ALA199) (LEU235) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d1e4oa_ : (GLY650) (GLY677) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d3e7ba_ : (ASN86) (ARG122) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Human (Homo sapiens) [TaxId: 9606]
d2g9da1 : (ASN55) (MSE95) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Succinylglutamate desuccinylase AstE |Vibrio cholerae [TaxId: 666]
d2g39a1 : (ASP126) (ILE164) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d3h64a_ : (PRO265) (ARG301) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Serine/threonine protein phosphatase 5, PP5 |Human (Homo sapiens) [TaxId: 9606]
d2pk8a_ : (ASP29) (GLU67) [view usage] : d.274.1.1 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Pyrococcus furiosus [TaxId: 2261]
d1gk3a_ : (THR1) (ASP28) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d1rzua_ : (MET133) (ILE162) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d3h60a_ : (THR263) (ARG301) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jdqa_ : (THR26) (ILE60) [view usage] : d.68.3.3 |IF3-like |SirA-like |SirA-like |Hypothetical protein TM0983 |Thermotoga maritima [TaxId: 2336]
d1k2vn_ : (ILE38) (ASP61) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d1cfza_ : (MET1) (ASP40) [view usage] : c.56.1.1 |Phosphorylase/hydrolase-like |HybD-like |Hydrogenase maturating endopeptidase HybD |Hydrogenase maturating endopeptidase HybD |Escherichia coli [TaxId: 562]
d1yg6n_ : (SER88) (ASN116) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |automated matches |Escherichia coli [TaxId: 562]
d4bl5d_ : (ARG9) (VAL41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x2gc2 : (ASP41) (ARG70) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Two-domain LplA, N-terminal domain |Escherichia coli [TaxId: 562]
d1efdn_ : (ILE38) (ASP61) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d1yaca_ : (PRO53) (PRO85) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |YcaC |Escherichia coli [TaxId: 562]
d2a2pa1 : (ARG39) (PRO76) [view usage] : c.47.1.23 |Thioredoxin fold |Thioredoxin-like |Selenoprotein W-related |Selenoprotein M |Mouse (Mus musculus) [TaxId: 10090]
d4bl5c_ : (ARG9) (VAL41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3trra_ : (LYS90) (ALA116) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2og1a_ : (HIS107) (GLY136) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1kf0a_ : (VAL159) (GLY186) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Pig (Sus scrofa) [TaxId: 9823]
d3nfza_ : (ARG13) (LEU52) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1esza_ : (ILE38) (ASP61) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d1iu9a_ : (GLU188) (PRO213) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Aspartate racemase |Pyrococcus horikoshii OT3 [TaxId: 70601]
d2awxa_ : (SER376) (SER407) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1gqyb1 : (SER79) (GLN106) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d1gl9b2 : (PHE299) (GLY325) [view usage] : c.37.1.16 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Helicase-like "domain" of reverse gyrase |Helicase-like "domain" of reverse gyrase |Archaeoglobus fulgidus [TaxId: 2234]
d3e7aa_ : (ASN86) (ARG122) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Human (Homo sapiens) [TaxId: 9606]
d2elea_ : (MET1) (TYR35) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d3qxib_ : (PRO99) (ALA124) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d1cz3a_ : (GLY39) (LEU63) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Thermotoga maritima [TaxId: 2336]
d2g39b1 : (ASP126) (ILE164) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d1v9la1 : (ARG315) (VAL341) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Pyrobaculum islandicum [TaxId: 2277]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.69, d.68, c.2, d.159, i.1, c.108, c.90, c.56, c.92, d.157, c.66, c.124, c.93, c.14, a.127, c.37, d.104, c.47, c.86,
c.87, c.71, b.122, d.126, c.78, c.41, c.33, d.134, c.65, b.61, b.43, c.119, c.5, b.36, c.100, c.114, d.274