Tableau information
Concept source: d4pv4a1 amino acid (a.a.) range (GLY88)(PRO107)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY88) (GLY92) E1
(GLY92) (ALA101) H2
(ASP103) (PRO107) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -78.6° H2
E3 -126.5° 146.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zhra_ : (GLU116) (GLY156) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1ep3a_ : (ILE216) (GLY249) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Lactococcus lactis, isozyme B [TaxId: 1358]
d2iy1a_ : (GLY553) (PHE587) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 1 |Human (Homo sapiens) [TaxId: 9606]
d1jjac_ : (THR275) (THR296) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Asparaginase type II |Escherichia coli [TaxId: 562]
d1z2da_ : (ILE39) (ILE66) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Bacillus subtilis [TaxId: 1423]
d2pawa2 : (ASP800) (VAL833) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |Poly(ADP-ribose) polymerase, C-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d4pfta_ : (CYS200) (PRO220) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1o63b_ : (ASP147) (ASP164) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d3uwya_ : (GLN66) (GLY96) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Staphylococcus aureus [TaxId: 282458]
d1o64a_ : (ASP147) (ASP164) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1z05a1 : (LEU58) (LEU77) [view usage] : a.4.5.63 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ROK associated domain |Transcriptional regulator VC2007 N-terminal domain |Vibrio cholerae [TaxId: 666]
d2if9a_ : (HIS201) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d4bnda_ : (VAL86) (GLU129) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d1nnsa_ : (THR275) (THR296) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Asparaginase type II |Escherichia coli [TaxId: 562]
d1o64b_ : (ASP147) (ASP164) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1xr5a_ : (TYR335) (PRO355) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Human rhinovirus 14, HRV-14 [TaxId: 12131]
d2j7qa1 : (TYR113) (GLY139) [view usage] : d.3.1.20 |Cysteine proteinases |Cysteine proteinases |M48USP-like |Tegument protein M48; N-terminal domain |Murine cytomegalovirus (MCMV) [TaxId: 10366]
d1bmfe1 : (LEU414) (PRO433) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 3 |Cow (Bos taurus) [TaxId: 9913]
d1qcxa_ : (GLY289) (ASN318) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type B [TaxId: 5061]
d2cwwa1 : (MET1) (ARG22) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein TTHA1280, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1s1io_ : (ARG59) (VAL84) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tueb_ : (TYR173) (PHE193) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d1g96a_ : (GLY12) (ARG70) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin C |Human (Homo sapiens) [TaxId: 9606]
d3pdva_ : (THR30) (GLY46) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Homo sapiens, influenza a virus [TaxId: 9606]
d2k1za_ : (GLY7) (ARG34) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1veca_ : (ALA267) (ASN288) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEAD box RNA helicase rck/p54 |Human (Homo sapiens) [TaxId: 9606]
d1dgqa_ : (LEU204) (THR238) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d1h8ee1 : (LEU414) (PRO433) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 3 |Cow (Bos taurus) [TaxId: 9913]
d2hr7b3 : (GLY317) (GLY338) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1usyg_ : (ASP147) (ASP164) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1wxwb2 : (SER143) (VAL162) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d4nbpa_ : (HIS202) (GLY226) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Jc polyomavirus [TaxId: 10632]
d3fmob_ : (ALA275) (LYS298) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gd4a_ : (SER7) (VAL41) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin A (stefin A) |Human (Homo sapiens) [TaxId: 9606]
d2j0sa1 : (ALA219) (ARG243) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lg3a_ : (LYS202) (ASP235) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Yersinia pestis [TaxId: 632]
d2hyic1 : (ALA219) (ARG243) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Probable ATP-dependent RNA helicase DDX48 |Human (Homo sapiens) [TaxId: 9606]
d1xwdc1 : (ARG59) (ILE77) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d2q5we_ : (GLU49) (GLY84) [view usage] : d.41.5.0 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1g7ua_ : (ASN176) (VAL200) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) |Escherichia coli [TaxId: 562]
d3qa3e_ : (ARG208) (THR241) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d4p91a_ : (SER95) (LEU113) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2yy7a_ : (ILE36) (LEU55) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Flavobacterium frigidimaris [TaxId: 262320]
d2g39a2 : (GLU288) (GLY308) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d3nbfb_ : (ALA183) (VAL205) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d1ijba_ : (GLN590) (LEU621) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Human (Homo sapiens) [TaxId: 9606]
d1e5la2 : (LYS194) (PRO222) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Saccharopine reductase |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1ohhd1 : (LEU414) (LEU434) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 3 |Cow (Bos taurus) [TaxId: 9913]
d1w62b_ : (ARG293) (SER327) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1xwdf_ : (ARG59) (ILE77) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d1oaod_ : (GLY562) (TYR585) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d3qa3g_ : (ARG208) (THR241) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d1usyh_ : (ASP147) (ASP164) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d2dfxe_ : (THR51) (ASP70) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |automated matches |Escherichia coli [TaxId: 562]
d2if9b_ : (HIS201) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d1k0ta_ : (HIS2) (SER40) [view usage] : d.58.1.2 |Ferredoxin-like |4Fe-4S ferredoxins |7-Fe ferredoxin |Photosystem I iron-sulfur protein PsaC |Synechococcus sp. pcc 7002 [TaxId: 32049]
d2exra1 : (GLY38) (LEU63) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ipra_ : (HIS201) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d1fx0b1 : (LEU431) (LEU451) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 3 |Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
d1a26a2 : (ASP800) (VAL833) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |Poly(ADP-ribose) polymerase, C-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d2aw5b1 : (VAL195) (GLY218) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fhzb_ : (THR43) (PRO63) [view usage] : d.243.1.2 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin E5 nuclease domain |Colicin E5 |Escherichia coli [TaxId: 562]
d3wjaa1 : (VAL205) (GLY228) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2flic_ : (VAL33) (PHE48) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d2nl8a_ : (HIS201) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d2fufa_ : (HIS201) (LYS224) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d1edyb_ : (GLY53) (THR77) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-1-macroglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qa3i_ : (ARG208) (THR241) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d4le5b1 : (ASN58) (SER106) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Campylobacter jejuni [TaxId: 195099]
d3kj4a_ : (ALA94) (LEU112) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3kj4a_ : (ARG119) (LEU137) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3kj4a_ : (SER239) (LEU257) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, c.1, c.10, c.94, c.2, d.58, i.1, c.108, c.66, c.124, b.50, c.37, c.55, d.166, d.3, d.81, c.62, b.122, b.1,
d.17, d.21, d.41, b.91, a.4, d.145, e.26, c.88, c.58, d.89, d.130, c.44, b.36, a.69, d.243