Protein Concepts Dictionary

Tableau information

Concept source:  d3skje_  amino acid (a.a.) range (ASP124)(GLY147)

nSSEs in this Concept: 3

String of secondary struct.elems. (SSEs) defining this concept: EHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP124)  (SER129) E1
	  (SER129)  (ARG135) H2
	  (VAL141)  (GLY147) E3

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                   
H2      -66.7°   H2            
E3     -140.8° -102.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2a99a2 :   (PRO114)  (HIS140)   [view usage] : d.176.1.1 |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Sulfite oxidase, middle catalytic domain |Chicken (Gallus gallus) [TaxId: 9031]
 d1jl3a_ :    (ILE39)   (ILE66)   [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Bacillus subtilis [TaxId: 1423]
 d3skje_ :   (ASP124)  (GLY147)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ae0x1 :   (HIS306)  (LYS334)   [view usage] : b.52.1.4 |Double psi beta-barrel |Barwin-like endoglucanases |MLTA-like |Membrane-bound lytic murein transglycosylase A, MLTA |Escherichia coli [TaxId: 562]
 d2gxqa_ :   (ALA183)  (VAL205)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d1jfva_ :    (ILE39)   (LEU66)   [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |Arsenate reductase ArsC |Staphylococcus aureus [TaxId: 1280]
 d1bg2a_ :     (ASN8)   (GLY35)   [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Human (Homo sapiens) [TaxId: 9606]
 d1cf1c1 :   (PHE152)  (HIS179)   [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
 d1wdea_ :   (GLY179)  (GLY221)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Aeropyrum pernix [TaxId: 56636]
 d1bmfd3 :   (ASP330)  (ILE357)   [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of beta subunit of F1 ATP synthase |Cow (Bos taurus) [TaxId: 9913]
 d1koea_ :   (SER199)  (SER233)   [view usage] : d.169.1.5 |C-type lectin-like |C-type lectin-like |Endostatin |Endostatin |Mouse (Mus musculus) [TaxId: 10090]
 d1gw0a3 :   (GLN455)  (ALA483)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Fungus (Melanocarpus albomyces) [TaxId: 204285]
 d1t5ya1 :   (GLY142)  (GLY170)   [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Nip7p homolog, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1ttua3 :   (GLN477)  (MET500)   [view usage] : b.42.7.1 |beta-Trefoil |DNA-binding protein LAG-1 (CSL) |DNA-binding protein LAG-1 (CSL) |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d3mwja_ :   (ALA183)  (VAL205)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d2hldd2 :   (ASP330)  (LEU357)   [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1a8da2 :   (LEU421)  (THR445)   [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |Tetanus neurotoxin |Clostridium tetani [TaxId: 1513]
 d2a9ab1 :   (PRO114)  (HIS140)   [view usage] : d.176.1.1 |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Sulfite oxidase, middle catalytic domain |Chicken (Gallus gallus) [TaxId: 9031]
 d1cf1a1 :   (PHE152)  (HIS179)   [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
 d3t9ma_ :   (ASP221)  (GLY261)   [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Aeromonas hydrophila, CphA [TaxId: 644]
 d3oehd2 :   (ASP330)  (LEU357)   [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.90,   d.157,    c.37,    b.18,   d.169,     b.6,   b.122,     b.1,   d.176,    b.42,    b.52,    c.44